Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 618 a.a., protein-export membrane protein SecD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  715 bits (1845), Expect = 0.0
 Identities = 376/622 (60%), Positives = 477/622 (76%), Gaps = 22/622 (3%)

Query: 7   NQAAKRLINHYSAWKYVVLVTTIIILTLSAIPTWYGEQPSIQLQSKDATSVLRNVPELTQ 66
           N  +K+L+NHYSAWKY+VL+ TII++  SA+PTWYGE  ++Q+ +K   ++     EL  
Sbjct: 3   NIQSKKLLNHYSAWKYIVLIVTIIVMLFSALPTWYGENAAVQVGAKAGLNL--TPIELRD 60

Query: 67  LLNKQNIQAD--EITQQGDN---TTLVFANETQQSQARNALDALVKEGDTITYSYVSVAP 121
            L  Q I+    E+ Q G++   T +V  ++++Q+  +  + ++V E   +T + VS AP
Sbjct: 61  KLKAQGIEVKRIEVKQHGEDKGQTLIVLNDDSEQTLVKTLVSSMVIEPKELTLALVSAAP 120

Query: 122 KWLGNLGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAERLRGVVVQA 181
            WL NLGF PIKLGLDLRGGVQFLL+VDV   +Q Q D+++++++  LR +++RG  V+ 
Sbjct: 121 SWLQNLGFEPIKLGLDLRGGVQFLLDVDVQPVYQAQADALVESLRQFLREQQIRGASVR- 179

Query: 182 MGNDAFEVKTEQPQALSH-----------VRKYLQENYRGWEIRQGSDQLQVQPSQQNKS 230
           + N   +V  +   ALS            VR+++Q++Y  W++    + L ++ SQ  +S
Sbjct: 180 IDNTRDDVALQIAIALSDAAQADNSARAAVRQFIQQSYPTWQLTNADNGLVIKLSQDEQS 239

Query: 231 EFQTATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAKNVIGATASLA 290
           + +  T+QQNL+IMR RIEELGITEALVQRQGEH IRIELPGVQDP+ AKNVIGATASLA
Sbjct: 240 KLRNLTVQQNLQIMRSRIEELGITEALVQRQGEHRIRIELPGVQDPAAAKNVIGATASLA 299

Query: 291 FYEAKSPTDARSYDDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDNMGMSEVNISLDH 350
           F+E K   ++ S +  +L+D +G PV +A+ PVL G+HIV+ARA +  MGM+EVNI LD 
Sbjct: 300 FFEVK---ESGSVNAQVLKDKSGNPVYVARSPVLGGDHIVDARANIGEMGMAEVNIHLDR 356

Query: 351 AGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSEKVISVATIQSQLGSQFRITGAGS 410
            GG+ MS+FS  +IGKPMAT Y EY  + +G+  +++++ISVATIQSQLG +FRITGAG+
Sbjct: 357 IGGQKMSEFSRANIGKPMATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGAGT 416

Query: 411 MEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWYR 470
            +EAQQLALLLRAGS+TAPVTIVEERTIG +LG ENI NGFAAL LGM +TL FMALWYR
Sbjct: 417 YQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIENGFAALGLGMGITLLFMALWYR 476

Query: 471 RLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDKLS 530
           RLGWVANVAL+ NM  L GL+AL+PGAVLTLPGIAGLVLTVGMAVDTNVLIFERI+DKL 
Sbjct: 477 RLGWVANVALISNMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLK 536

Query: 531 EGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLTSMFSG 590
           EGR+FA AIDTGFDSAFSTI DAN TTMITAV+LYSIGNGPIQGFALTLGLGLLTSMF+G
Sbjct: 537 EGRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTG 596

Query: 591 VFASRALINLVWGRDTRRDVRV 612
           +FASRALINLV+GRD RR VRV
Sbjct: 597 IFASRALINLVYGRDARRHVRV 618