Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 532 a.a., protein-export membrane protein SecD (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  280 bits (715), Expect = 1e-79
 Identities = 177/499 (35%), Positives = 269/499 (53%), Gaps = 45/499 (9%)

Query: 132 IKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAERLRGVVVQAMGNDAFEVKT 191
           I LGLDL GG+   L VDVDKA +     M   ++ S R + +  +  + +  D  E   
Sbjct: 44  ISLGLDLMGGIHLTLGVDVDKAVENSLSQMGQDIRSSAREKDIFILRPRILPGDRVEFVL 103

Query: 192 EQPQALSHVRKYLQENYRGW------EIRQGSDQLQVQPSQQNKSEFQTATIQQNLKIMR 245
            +      + + L + +         EI  G  +      ++ ++  +   + Q +K +R
Sbjct: 104 AKAAQRDQLGEMLAKQFPQLAVGAPVEIDGGQLRYVATLKKEQRTHIEDMALDQAVKTIR 163

Query: 246 DRIEELGITEALVQRQGEHAIRIELPGVQDPSQAKNVIGATASLAFYEAKSPTDARSYDD 305
           +RI++ G+ E  +++Q +H I+++LPG+ DP++A  +IG TA L F   +   D      
Sbjct: 164 NRIDQFGVAEPDIRKQQDHRIQVQLPGLADPARAIQIIGKTAHLEFRIVRDDVDPEKLAK 223

Query: 306 -----------LILEDGNGR----PVILAKRPVLSGEHIVNARAGVDNMGMSEVNISLDH 350
                      ++   G+G     PV L K  +L+GE++ +AR G D    + V ++ + 
Sbjct: 224 GLVPPGVDVLPMMRRGGDGSAGEVPVALDKEILLTGENVADARPGFDQFNQAYVMLTFNS 283

Query: 351 AGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSEKVISVATIQSQL-GSQFRITGAG 409
            G  I    +G+++ K +A V                KV S  +IQ ++ G +  ITG  
Sbjct: 284 RGAAIFERVTGENVRKRLAIVL-------------DGKVYSAPSIQEKIAGGRASITGHF 330

Query: 410 SMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWY 469
           + EEAQ LA++LRAGSL APV ++EERT+G SLG+E+I +G  A  +G A  + F  L+Y
Sbjct: 331 TTEEAQDLAIVLRAGSLPAPVNVLEERTVGPSLGQESIDSGILAGQVGGAAVVVFTILYY 390

Query: 470 RRLGWVANVALLVNMACLLGLIALLP----GAVLTLPGIAGLVLTVGMAVDTNVLIFERI 525
              G     A+ V M C   L+ L      GA LTLPG+AG+ LT+GM VD NVLI+ERI
Sbjct: 391 GASG-----AIAVGMLCFTILLILAGMAGFGATLTLPGLAGIALTIGMGVDANVLIYERI 445

Query: 526 RDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLT 585
           R++L  G     AI  GFD A  +I D+N+TT+I A ILY  G GP++GFA+TL LG+L 
Sbjct: 446 REELRRGLTPLAAIHAGFDRAMLSITDSNLTTVIAAAILYQFGTGPVRGFAVTLTLGILA 505

Query: 586 SMFSGVFASRALINLVWGR 604
           SMF+ +F SRA+ +L W R
Sbjct: 506 SMFTAIFVSRAVFDL-WMR 523