Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., protein-export membrane protein SecD (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  314 bits (804), Expect = 7e-90
 Identities = 200/536 (37%), Positives = 299/536 (55%), Gaps = 34/536 (6%)

Query: 97  QARNALDALVKEGDTITYSYVSVAPKWLGNLGFSPIKLGLDLRGGVQFLLNVDVDKAFQE 156
           +  N   ALV+ G   T    +   +W   L  S + LGLDLRGG   L  V V   + +
Sbjct: 33  ETHNDAAALVEAGAAETGEIAADLGQWPAFLPSSLVNLGLDLRGGAHLLAEVQVADVYAD 92

Query: 157 QRDSMMDAVKDSLRAERLRGVVVQAMGN--DAFEVKTEQPQ----ALSHVRKYLQE--NY 208
           + D+    V+D+LR  R     ++   +  D   V+   P+    A++ VR   Q   ++
Sbjct: 93  RMDAFWPEVRDALRDARDTVGTIRRQDSPPDQLRVRISNPEEITRAVAIVRGLAQPIVSF 152

Query: 209 RGW-----EIRQGSDQLQVQPSQQNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQGE 263
            G      E+      L ++ S+  K      T+QQ+L+I+R R++E G  E  +QRQGE
Sbjct: 153 TGVGQDDIEVSFEGADLIIELSEAEKQATDDRTLQQSLEIIRRRVDEAGTREPTIQRQGE 212

Query: 264 HAIRIELPGVQDPSQAKNVIGATASLAFYEAKSPT---DARSYDDLILEDGNGRP---VI 317
             + I++PG+   S+ K +IG TA L F    S T   DA      I+      P    +
Sbjct: 213 DRVLIQVPGIASASELKELIGQTARLTFNPVVSRTSDPDAPPGPRNIVLPSIDEPNTYYV 272

Query: 318 LAKRPVLSGEHIVNARAGVDNMGMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKT 377
           L + PV+SG+ + +A+   D  G   VN   +  G ++  D++ ++IG P A V      
Sbjct: 273 LEQTPVVSGDQLTDAQPSFDQNGRPAVNFRFNPTGARLFGDYTAENIGSPFAIVL----- 327

Query: 378 NARGETVRSEKVISVATIQSQL-GSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEER 436
                     +VIS   IQS + G    ITG  S+EE+ QLA+LLRAG+L A +  +EER
Sbjct: 328 --------DNEVISAPVIQSHIPGGSGIITGNFSVEESTQLAVLLRAGALPAEMIFLEER 379

Query: 437 TIGASLGEENIANGFAALALGMAMTLTFMALWYRRLGWVANVALLVNMACLLGLIALLPG 496
           TIG  LG+++I  G  A  + +   L FM L Y   G  AN+ALL+N+A + G+++L+ G
Sbjct: 380 TIGPELGQDSIEAGALACLVALGAVLVFMMLSYGLFGVFANIALLLNIALIFGVLSLI-G 438

Query: 497 AVLTLPGIAGLVLTVGMAVDTNVLIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANIT 556
           A LTLPGIAG+VLT+GMAVD NVL+FERIR++L   R  A+AI+ G++ A S I+DAN T
Sbjct: 439 ATLTLPGIAGIVLTIGMAVDANVLVFERIREELKTARGPARAIELGYEKALSAIVDANTT 498

Query: 557 TMITAVILYSIGNGPIQGFALTLGLGLLTSMFSGVFASRALINLVWGRDTRRDVRV 612
           T I A IL+++G GP++GFA+TLG+G++TS+F+ +F +R LI L + R   + + V
Sbjct: 499 TFIVAAILFTLGAGPVRGFAVTLGIGIVTSVFTAIFVTRLLIVLWFERRRPKQIEV 554