Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 1010 a.a., protein-export membrane protein SecD/SecF (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  175 bits (443), Expect = 1e-47
 Identities = 99/284 (34%), Positives = 169/284 (59%), Gaps = 16/284 (5%)

Query: 324 LSGEHIVNARAGVDNMGMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNARGET 383
           L G+ + +A+   D      V+++++  G +  +  + ++IG+ +A V   Y        
Sbjct: 398 LEGDVVTDAKDEFDQYSKPAVSMTMNSDGARRWAQLTKQNIGRSIAIVLDNY-------- 449

Query: 384 VRSEKVISVATIQSQL-GSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASL 442
                V S   + S++ G + +ITG  + E+A+ LA +L++G + AP  IV+E  +G SL
Sbjct: 450 -----VYSAPNVNSEITGGRSQITGHFTPEQAKDLANVLKSGKMPAPAHIVQEDIVGPSL 504

Query: 443 GEENIANGFAALALGMAMTLTFMALWYRRL-GWVANVALLVNMACLLGLIALLPGAVLTL 501
           G+E+I  G  +  + + + + +M   Y  + G VAN AL +N    LG+++    A LT+
Sbjct: 505 GQESINAGIFSFVVALILLMIYMCSMYGFIPGMVANCALFLNFFFTLGILSSFQAA-LTM 563

Query: 502 PGIAGLVLTVGMAVDTNVLIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITA 561
            GIAG+VL++GMAVD NVLI+ER +++L  G+   +A+  G+ +AFS I D+N+T++IT 
Sbjct: 564 SGIAGMVLSLGMAVDANVLIYERTKEELRAGKGVKKALADGYSNAFSAIFDSNLTSIITG 623

Query: 562 VILYSIGNGPIQGFALTLGLGLLTSMFSGVFASRALINLVWGRD 605
           +IL++ G GPI+GFA TL +G+L S F+ VF +R +      +D
Sbjct: 624 IILFNFGTGPIRGFATTLIIGILVSFFTAVFMTRLVYEHFMNKD 667



 Score = 53.1 bits (126), Expect = 6e-11
 Identities = 40/175 (22%), Positives = 89/175 (50%), Gaps = 17/175 (9%)

Query: 431 TIVEERTIGASLGEENIANG------FAALALGMAMTLTFMALWYRRLGWVANVALLVNM 484
           +IV  + +G S+ ++ I  G       A +A+G+ + + F  + Y  +G +  VAL  + 
Sbjct: 818 SIVSSQKVGPSIADD-IKTGAVWSVVLALIAIGLYILIRFRNIAYS-IGSI--VALTCDT 873

Query: 485 ACLLGLIALLPGAV-----LTLPGIAGLVLTVGMAVDTNVLIFERIRD--KLSEGRNFAQ 537
             ++G  +LL G V     +    I  ++  +G +++  V+IF+R+R+   L   R+  Q
Sbjct: 874 IMIIGAYSLLWGIVPFSLEIDQTFIGAILTAIGYSINDKVVIFDRVREFFGLYPKRDKRQ 933

Query: 538 AIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLTSMFSGVF 592
             +   ++  +  ++ +++T+I  + ++ +G   I+ FA  + LG++    S +F
Sbjct: 934 LFNDSLNTTLARTINTSLSTLIVLLCIFILGGDSIRSFAFAMILGVVIGTLSSLF 988



 Score = 49.7 bits (117), Expect = 6e-10
 Identities = 37/165 (22%), Positives = 76/165 (46%), Gaps = 6/165 (3%)

Query: 132 IKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAERLRGVVVQAMGNDAFEVKT 191
           I LGLDL+GG+  +L V V    +   D+  D   +    E  +  V     +D   +  
Sbjct: 73  ISLGLDLKGGMNVILEVSVPDVIRALADNKPDENFNKALNEAAKQAVNSQ--DDIITLFV 130

Query: 192 EQPQALSHVRKYLQENYRGWEIRQGSDQLQVQPSQQNKSEFQT-ATIQQNLKIMRDRIEE 250
            + Q  +   K L E +   +++   +Q       +     +  A ++ +  ++R RI+ 
Sbjct: 131 REYQKTAPGAK-LSELFATQQLKDKVNQKSSDAEVEKVLRAEVKAAVENSYNVLRTRIDR 189

Query: 251 LGITEALVQRQGEHA--IRIELPGVQDPSQAKNVIGATASLAFYE 293
            G+ +  +Q   +    I +ELPG+++P + + ++  +A+L F+E
Sbjct: 190 FGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSANLEFWE 234