Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 687 a.a., preprotein translocase subunit SecD from Burkholderia phytofirmans PsJN

 Score =  370 bits (949), Expect = e-106
 Identities = 227/612 (37%), Positives = 345/612 (56%), Gaps = 33/612 (5%)

Query: 14  INHYSAWKYVVLVTTIIILTLSAIPTWYGEQPSIQLQSKDATSVLRN--VPELTQLLNKQ 71
           +N Y  WKY V++  ++I  +  +P  +GE P++Q+ S  AT  L +  +  +   L   
Sbjct: 1   MNRYPLWKYAVMLVALVIGLVYTLPNLFGEAPAVQVSSGKATVKLDSTTLSAVEAALAAN 60

Query: 72  NIQADEITQQGD----NTTLVFANETQQSQARNALDALVKEGDT-----ITYSYVSVAPK 122
            I+ D++T        N  +   +   Q + ++ L   +    T     +  +  S +P+
Sbjct: 61  QIKPDDVTFDNSATNANIRVRLPDTDTQLRVKDLLQKSLNSDPTDPQYIVALNLQSASPR 120

Query: 123 WLGNLGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAERLRGVVVQAM 182
           WL  L   P+ LGLDLRGGV FLL VD+  A  ++ DS     +  LR + +R   V  +
Sbjct: 121 WLTALHALPMYLGLDLRGGVHFLLQVDMAGALNKKLDSDASDARTLLRDKNIRDGGVNRV 180

Query: 183 GNDAFEVKTEQPQALSHVRKYLQENYRG--WEIRQGSD---QLQVQPSQQNKSEFQTATI 237
            N +  +         +  K L  +     W  + G D   QL    +   +   Q A +
Sbjct: 181 -NQSVVINFADQATADNASKQLSRSIAELQWASQAGPDGGVQLVGTFTPAVQKAVQDAAL 239

Query: 238 QQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAKNVIGATASLAFYEAK-- 295
           +QN+  + +R+ ELG+ E ++Q+QG   I +ELPGVQD ++AK++IG TA+L    A   
Sbjct: 240 KQNITTLHNRVNELGVAEPVIQQQGADRIVVELPGVQDTAKAKDIIGRTATLEARLADPV 299

Query: 296 ----SPTDARSYDDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDNMGMSEVNISLDHA 351
               +P+D     D +   GN  PV+L K+ + +G+ I++A AG D      VNI LD A
Sbjct: 300 NTHPNPSDPVPPGDELFTQGNQTPVLLRKQIIFTGDRIIDASAGFDEHQRPSVNIRLDSA 359

Query: 352 GGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSEKVISVATIQSQLGSQFRITGAGSM 411
           GG+ ++  S  +IGKPMA V  E     +GE      V++VATIQS+LG +F+ITG  + 
Sbjct: 360 GGRAVASISRDNIGKPMAMVLFE---KGKGE------VLTVATIQSELGDRFQITGQATP 410

Query: 412 EEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWYRR 471
           + A  LALLLRAGSL AP+ I+EERTIG SLG +NI  GF ++  G A    FM  +Y  
Sbjct: 411 QGAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKKGFHSVVWGFAAIAVFMIAYYML 470

Query: 472 LGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDKLSE 531
            G ++ + L VN+  L+ ++++L  A LTLPGIA + L +GMA+D NVLI ER+R++L  
Sbjct: 471 FGVISMIGLSVNLLLLIAVLSMLQ-ATLTLPGIAAIALALGMAIDANVLINERVREELRN 529

Query: 532 GRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLTSMFSGV 591
           G     AI  G+  A++TILD+N+TT+I  + L + G+GP++GFA+   +G+LTSMFS V
Sbjct: 530 GAPPQLAIQNGYAHAWATILDSNVTTLIAGIALLAFGSGPVRGFAIVHCIGILTSMFSAV 589

Query: 592 FASRALINLVWG 603
           F SR ++NL +G
Sbjct: 590 FFSRGIVNLWYG 601