Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 616 a.a., preprotein translocase subunit SecD (RefSeq) from Shewanella sp. ANA-3

 Score =  442 bits (1136), Expect = e-128
 Identities = 251/611 (41%), Positives = 377/611 (61%), Gaps = 24/611 (3%)

Query: 13  LINHYSAWKYVVLVTTIIILTLSAIPTWYGEQPSIQLQSKDATSVLRNVP-ELTQLLNKQ 71
           ++N Y  WK +++V  I I    A+P  +GE  ++Q+ +     V  +    + +LL  +
Sbjct: 1   MLNKYPMWKNIMVVLVIAIGCFYAVPNLFGEDHAVQVVATRGAEVTASTQARVNELLASK 60

Query: 72  NIQADEITQQGDNTTLVFANETQQSQARNALDALVKEGDTITYSYVSVAPKWLGNLGFSP 131
            I       +     +   N  QQ  A+  +   + +  T+  +     P+WL ++G SP
Sbjct: 61  GIAVKRSELEKGQLLVRVQNADQQLLAKETIAEDLGDKFTVALNLAPATPQWLESMGGSP 120

Query: 132 IKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAERLR--GVVVQAMGNDAFEV 189
           +KLGLDLRGGV FL+ VD+ +A ++  ++ +   +  LR E++R  G+   A G    E+
Sbjct: 121 MKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLREEKIRYAGIRNNAQG---IEI 177

Query: 190 KTEQPQALSHVRKYLQENYRGW---EIRQGSD-QLQVQPSQQNKSEFQTATIQQNLKIMR 245
           K    ++L+   ++L+         ++ +G D  LQ   S+    + +   +QQN+  +R
Sbjct: 178 KFRDAESLASAERFLKSRSNDMVFSDVSKGEDFALQAVMSETYLKQIKEEALQQNITTIR 237

Query: 246 DRIEELGITEALVQRQGEHAIRIELPGVQDPSQAKNVIGATASLAFYEAKSPTDARSYDD 305
           +R+ ELG+ E +VQRQG   I +ELPGVQD ++AK ++GATAS+ F+      D  +   
Sbjct: 238 NRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQS 297

Query: 306 LILEDGN-------GRPVILAKRPVLSGEHIVNARAGVDNMGMSEVNISLDHAGGKIMSD 358
             +  G+       G  V+L K  +L+G+HI  A+   D     +V+I+LD  GG I S+
Sbjct: 298 GRVPAGSEVYQRREGGQVVLKKEVMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTIFSN 357

Query: 359 FSGKHIGKPMATVYREYKT----NARGETV--RSEKVISVATIQSQLGSQFRITGAGSME 412
            +  +IGKPMAT++ EYK     NA G     + ++VISVATIQ++LG  F ITG  S  
Sbjct: 358 VTKDNIGKPMATLFIEYKDSGERNADGSVKMQKIQEVISVATIQARLGRNFVITGL-SHG 416

Query: 413 EAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWYRRL 472
           EAQ LALLLRAG+L APV+IVEERTIG SLG ENI +G  A+  GMA+ L FM ++YR  
Sbjct: 417 EAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIESGVQAMIWGMAVVLIFMLVYYRSF 476

Query: 473 GWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDKLSEG 532
           G +AN+AL  N+  ++G+++++PGAVLTLPGIAG+VLTVGMAVD NVLI+ERIR++L  G
Sbjct: 477 GLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAG 536

Query: 533 RNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLTSMFSGVF 592
           R+  QAI  G+ +AFSTI DANITT +TA+IL+++G G I+GFA+TL +G+ TSMF+ + 
Sbjct: 537 RSVQQAIHEGYGNAFSTIADANITTFLTALILFAVGTGAIKGFAVTLMIGIATSMFTAIV 596

Query: 593 ASRALINLVWG 603
            +RA++N +WG
Sbjct: 597 GTRAIVNAIWG 607