Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 294 a.a., preprotein translocase subunit SecF (RefSeq) from Shewanella sp. ANA-3

 Score = 62.4 bits (150), Expect = 3e-14
 Identities = 64/280 (22%), Positives = 126/280 (45%), Gaps = 18/280 (6%)

Query: 321 RPVLSGEHIVNARAGVDNMGMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNAR 380
           R V S   I    A +  +GM   N  LD  GG +        + + + +   +   NA 
Sbjct: 10  RYVSSAISIFLMLASLTIIGMKGFNWGLDFTGGVVTE----VQLDRRITSSELQPLLNA- 64

Query: 381 GETVRSEKVISVATIQSQLGSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGA 440
               + E  +  A+   +   ++  T   +++ AQ LA L         V ++    +G 
Sbjct: 65  --AYQQEVTVISASEPGRWVLRYADTAQSNVDIAQTLAPL-------GEVQVLNTSIVGP 115

Query: 441 SLGEENIANGFAALALGMAMTLTFMALWYR-RLGWVANVALLVNMACLLGLIALLPGAVL 499
            +G+E    G  AL + M   L +++  +  RL   A  AL+ ++  +L   +L      
Sbjct: 116 QVGKELAEQGGLALLVAMLCILGYLSYRFEWRLASGALFALVHDVIFVLAFFSLTQ-MEF 174

Query: 500 TLPGIAGLVLTVGMAVDTNVLIFERIRDKLSEGRNFA--QAIDTGFDSAFSTILDANITT 557
            L  +A ++  +G +++ +++I +RIR+ L      A  +  +    + FS  +  + TT
Sbjct: 175 NLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTT 234

Query: 558 MITAVILYSIGNGPIQGFALTLGLGLLTSMFSGVFASRAL 597
           ++T   L+ +G GP++GF++ + +G+LT  FS +    +L
Sbjct: 235 LMTVGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSL 274