Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 624 a.a., preprotein translocase subunit SecD (RefSeq) from Shewanella sp. ANA-3

 Score =  708 bits (1827), Expect = 0.0
 Identities = 369/624 (59%), Positives = 473/624 (75%), Gaps = 26/624 (4%)

Query: 10  AKRLINHYSAWKYVVLVTTIIILTLSAIPTWYGEQPSIQLQSKDATSVLRNVPELTQLLN 69
           +K+L+NHYSAWKY+VL+ TII++  SA+PTWYGE  ++Q+ +K   ++     EL   L 
Sbjct: 6   SKKLLNHYSAWKYLVLIVTIIVMLFSALPTWYGEDAAVQVGAKAGLNL--TPIELRDKLK 63

Query: 70  KQNIQADEI-----------TQQGDNTTLVFANETQQSQARNALDALVKEGDTITYSYVS 118
            Q ++   I           + +G  T +V  ++++Q+  +  + ++V E   +T + VS
Sbjct: 64  AQGVEVKRIEVKHAQQGSANSSEGGQTLIVLNDDSEQTLVKTLVSSMVSEPKELTLALVS 123

Query: 119 VAPKWLGNLGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAERLRG-- 176
            AP WL N+GF PIKLGLDLRGGVQFLL+VDV   +Q Q D+++++++  LR +++RG  
Sbjct: 124 AAPSWLQNMGFEPIKLGLDLRGGVQFLLDVDVQPVYQAQADALVESLRLFLREQQIRGAS 183

Query: 177 VVVQAMGNDAF--------EVKTEQPQALSHVRKYLQENYRGWEIRQGSDQLQVQPSQQN 228
           V + +  +DA         +       A S +R+++Q++Y  W++    + L V+ +Q+ 
Sbjct: 184 VRIDSTRDDAGLQIEIAFNDAAQSTNNARSTIRQFMQQSYPTWQLTNADNGLVVKLAQEE 243

Query: 229 KSEFQTATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAKNVIGATAS 288
           + + +  T+QQNL+IMR RIEELGITEALVQRQGEH IRIELPGVQDP+ AKNVIGATAS
Sbjct: 244 QIKLRNLTVQQNLQIMRSRIEELGITEALVQRQGEHRIRIELPGVQDPAAAKNVIGATAS 303

Query: 289 LAFYEAKSPTDARSYDDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDNMGMSEVNISL 348
           LAF+E K   ++ S +  +L+D +G PV +A+ PVL G+HIV+ARA +  MGM+EVNI L
Sbjct: 304 LAFFEVK---ESGSVNAQVLKDKSGNPVYVARTPVLGGDHIVDARANIGEMGMAEVNIHL 360

Query: 349 DHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSEKVISVATIQSQLGSQFRITGA 408
           D  GG+ MS+FS  +IGKPMAT Y EY  + +G+  +++++ISVATIQSQLG +FRITGA
Sbjct: 361 DRIGGQKMSEFSRANIGKPMATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGA 420

Query: 409 GSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALW 468
           G+ +EAQQLALLLRAGS+TAPVTIVEERTIG +LG ENI NGFAAL LGM +TL FMALW
Sbjct: 421 GTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIQNGFAALGLGMGITLLFMALW 480

Query: 469 YRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 528
           YRRLGWVANVAL+ NM  L GL+AL+PGAVLTLPGIAGLVLTVGMAVDTNVLIFERI+DK
Sbjct: 481 YRRLGWVANVALIANMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDK 540

Query: 529 LSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLTSMF 588
           L EGR+FA AIDTGFDSAFSTI DAN TTMITAV+LYSIGNGPIQGFALTLGLGLLTSMF
Sbjct: 541 LKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF 600

Query: 589 SGVFASRALINLVWGRDTRRDVRV 612
           +G+FASRALINLV+GRD RR VRV
Sbjct: 601 TGIFASRALINLVYGRDARRHVRV 624