Pairwise Alignments

Query, 300 a.a., protein translocase subunit SecF from Vibrio cholerae E7946 ATCC 55056

Subject, 304 a.a., Protein-export membrane protein SecF (TC 3.A.5.1.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  192 bits (488), Expect = 8e-54
 Identities = 110/285 (38%), Positives = 170/285 (59%), Gaps = 5/285 (1%)

Query: 12  IRYITGIISVLLMVISLGAFAIKGLNMGLDFTGGMVTEAIINHSVTKSQLMDQLQPVLGE 71
           +R +   +++ L V++L ++A KGLN GLDFTGG + E         +++ +QL      
Sbjct: 10  VRNVAFGVTLFLTVLALFSWATKGLNYGLDFTGGTLIELTYERPADVTKVREQLATSGYS 69

Query: 72  SVSATPSGEEGRWVIRYPLAAEDAT---PVDIATELHHISDQVQIVSNSMVGSQVGQELI 128
                  G     ++R P   ED      V  A +     +  Q+     VG QVG+EL 
Sbjct: 70  DAIVQSFGATTDLLVRMP--GEDPQLGHQVAEALQKAGGDNPAQVKRVEFVGPQVGEELR 127

Query: 129 DQGGLALLICLLSILAYLSFRFEWRLASGALLALLHDVILVLGFFAITQMEFNLTVFAAV 188
           DQGGL +L+ L  IL YL+FRF+W+ A GA+++L+HDVI+ +G  +  Q+ F+LTV AAV
Sbjct: 128 DQGGLGMLMALGGILIYLAFRFQWKFAVGAIVSLIHDVIVTVGILSFFQITFDLTVLAAV 187

Query: 189 LAVLGYSLNDSIIISDRIRELLLAKQQTPTADINDQAIIATFSRTMVTSGTTLMTISALW 248
           LA++GYSLND+I++ DR+RE     ++    +  + +   T  RTM TS +TL+ I+AL 
Sbjct: 188 LAIIGYSLNDTIVVFDRVRENFRVLRKASLIENINISTTQTLLRTMATSISTLLAIAALL 247

Query: 249 LMGGAPLQGFAIAMFIGIISGTWSSISIGTVLPEWLGLESKHYLP 293
           + GG  L GF+IA+F+G+++GT+SSI I  V+  WL L ++  +P
Sbjct: 248 IFGGDNLFGFSIALFVGVLAGTYSSIYIANVVLIWLNLSTEDLIP 292



 Score = 23.5 bits (49), Expect = 0.006
 Identities = 17/80 (21%), Positives = 38/80 (47%), Gaps = 13/80 (16%)

Query: 166 VILVLGFFAITQMEFNLTVFAAVLAVLGYS---LNDSI---------IISDRIRELLLAK 213
           ++  + F  +  + F +T+F  VLA+  ++   LN  +         +  +R  ++   +
Sbjct: 1   MLRTINFMGVRNVAFGVTLFLTVLALFSWATKGLNYGLDFTGGTLIELTYERPADVTKVR 60

Query: 214 QQTPTADINDQAIIATFSRT 233
           +Q  T+  +D AI+ +F  T
Sbjct: 61  EQLATSGYSD-AIVQSFGAT 79