Pairwise Alignments

Query, 300 a.a., protein translocase subunit SecF from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., protein-export membrane protein, SecD/SecF family from Pseudomonas stutzeri RCH2

 Score =  192 bits (487), Expect = 1e-53
 Identities = 112/284 (39%), Positives = 164/284 (57%), Gaps = 3/284 (1%)

Query: 12  IRYITGIISVLLMVISLGAFAIKGLNMGLDFTGGMVTEAIINHSVTKSQLMDQLQPVLGE 71
           +R++   ++VLL V SL +  +KGLN GLDFTGG + E      V   Q+  QL      
Sbjct: 10  VRHVAFALTVLLTVASLASLVVKGLNFGLDFTGGTLIELGYERPVELEQVRGQLVQAGFA 69

Query: 72  SVSATPSGEEGRWVIRYPLAAEDATPVDIATELHHIS--DQVQIVSNSMVGSQVGQELID 129
                  G     ++R P   +      +A+ L +    + V +     VG  VG+EL D
Sbjct: 70  DAVVQSFGATTDVLVRMP-GDDPQLGERVASALRNADSGNSVSVKRVEFVGPAVGEELRD 128

Query: 130 QGGLALLICLLSILAYLSFRFEWRLASGALLALLHDVILVLGFFAITQMEFNLTVFAAVL 189
           QGGL +L+ L  IL Y++FRF+W+   GA+L+L HDVILVLG F+  Q+ F+LTV AAVL
Sbjct: 129 QGGLGMLLALGGILVYVAFRFQWKFGLGAVLSLFHDVILVLGVFSFFQISFDLTVLAAVL 188

Query: 190 AVLGYSLNDSIIISDRIRELLLAKQQTPTADINDQAIIATFSRTMVTSGTTLMTISALWL 249
           AV+GYSLND+I+I DRIRE     ++    +  + +   T  RT+ TS +TL+ + AL +
Sbjct: 189 AVIGYSLNDTIVIFDRIRENFRMLRKAELLENINISTTQTLLRTVATSVSTLLAVGALMV 248

Query: 250 MGGAPLQGFAIAMFIGIISGTWSSISIGTVLPEWLGLESKHYLP 293
            GG  L GF++A+ IG+ +GT+SS+ +  +L  WL L     +P
Sbjct: 249 FGGENLWGFSLALLIGVGAGTYSSVYVAGMLLVWLKLTRDDLIP 292