Pairwise Alignments

Query, 300 a.a., protein translocase subunit SecF from Vibrio cholerae E7946 ATCC 55056

Subject, 844 a.a., preprotein translocase subunit SecD/SecF from Sinorhizobium meliloti 1021

 Score =  150 bits (378), Expect = 1e-40
 Identities = 92/270 (34%), Positives = 143/270 (52%), Gaps = 5/270 (1%)

Query: 13  RYITGIISVLLMVISLGAFAIKGLNMGLDFTGGMVTEAIINHSVTKSQLMDQLQPV-LGE 71
           R++    S  L + S+  F   GLN G+DF GG+  EA+    +    L   L+ + LGE
Sbjct: 546 RFLAIGFSAFLSISSVILFFTPGLNYGIDFIGGIQVEAVSKEKINLPTLRQSLEELNLGE 605

Query: 72  SVSATPSGEEGRWV-IRYPLAAEDATPVDIATELHHISDQVQIVS---NSMVGSQVGQEL 127
                  G +   + ++     E A  V +      ++  +   S     +VG  V  EL
Sbjct: 606 VALQDFGGGQSVLIRVQRQPGGEQAQTVALNKVKDAVTTAIPGASMERTEVVGPTVSGEL 665

Query: 128 IDQGGLALLICLLSILAYLSFRFEWRLASGALLALLHDVILVLGFFAITQMEFNLTVFAA 187
              G LA+ + +L+IL Y+ FRFEW  A GA+  LL D+   +GFFA+T ++FNLT  AA
Sbjct: 666 ARSGFLAVALAMLAILLYIWFRFEWHFAVGAIAVLLLDITKTVGFFALTGIDFNLTAIAA 725

Query: 188 VLAVLGYSLNDSIIISDRIRELLLAKQQTPTADINDQAIIATFSRTMVTSGTTLMTISAL 247
           +L ++GYS+ND +++ DR+RE L   +  P +D+ D +I    +R + TS  T +++  +
Sbjct: 726 LLTMIGYSVNDKVVVYDRMRENLRKYKSMPFSDLIDMSINQVIARCIFTSAATALSLVPM 785

Query: 248 WLMGGAPLQGFAIAMFIGIISGTWSSISIG 277
            + GG  +Q FA  M  G+I  T SSI IG
Sbjct: 786 AIWGGEAVQSFAWPMIFGVIVATTSSIYIG 815



 Score = 52.8 bits (125), Expect = 3e-11
 Identities = 54/221 (24%), Positives = 93/221 (42%), Gaps = 23/221 (10%)

Query: 67  PVLGESVSATPSGEEGRWVIRYPLAAEDATPVDIATELHHISDQVQIVSNSMVGSQVGQE 126
           PV+ E +        GR  I      E+AT +        +   + I+    VG  +G +
Sbjct: 308 PVINEPILG------GRGQISGSFTVEEATVLSALLRSGALPAPLTIIEERSVGPNLGSD 361

Query: 127 LIDQG------GLALLICLLSILAYLSFRFEWRLASGALLALLHDVILVLGFFAITQMEF 180
            I  G      G  L++ L+ +L        W + +   L L    I+ +G   +     
Sbjct: 362 SIRMGLFTGLAGFGLVVVLMVVLYGA-----WGMIANVGLVL--HTIMTIGVLGLIGSTL 414

Query: 181 NLTVFAAVLAVLGYSLNDSIIISDRIRELLLAKQQTPTA-DINDQAIIATFSRTMVTSGT 239
            L   A ++  +G +++ +I+I+ RIRE   A      A DI      AT   + VT   
Sbjct: 415 TLPGIAGIILGIGMAVDANILINARIREETEAGAGAMKALDIGFNKAYATIIDSNVT--- 471

Query: 240 TLMTISALWLMGGAPLQGFAIAMFIGIISGTWSSISIGTVL 280
           TL     L+  G  P++GFA+ M +GI    ++S+++  +L
Sbjct: 472 TLAGTVLLFWFGSGPVKGFAVTMMLGIGISMFTSVTVVRLL 512