Pairwise Alignments

Query, 300 a.a., protein translocase subunit SecF from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., preprotein translocase subunit SecF (RefSeq) from Shewanella amazonensis SB2B

 Score =  219 bits (557), Expect = 8e-62
 Identities = 122/298 (40%), Positives = 183/298 (61%), Gaps = 5/298 (1%)

Query: 5   LKSRIRPIRYIT--GIISVLLMVISLGAFAIKGLNMGLDFTGGMVTEAIINHSVTKSQLM 62
           +K  I  +R+     I+S +L+V SL + A +G+N GLDFTGG V E   +  V    L 
Sbjct: 7   IKGSINFLRHAAPISILSAILVVGSLVSLATRGINWGLDFTGGTVVEMEFSKPVNLETLR 66

Query: 63  DQLQPVLGESVSATPSGEEGRWVIRYPL---AAEDATPVDIATELHHISDQVQIVSNSMV 119
           + L   L         G     ++R  +      DA    +  +   +  +V       V
Sbjct: 67  NNLTEPLVAGAVVQNFGSSRDVLVRLQVREGVKSDAQVRVVMAKATELDPEVTQKRVEFV 126

Query: 120 GSQVGQELIDQGGLALLICLLSILAYLSFRFEWRLASGALLALLHDVILVLGFFAITQME 179
           G QVG+EL +QGGLA+L+ L+ IL Y+SFRFEWRLA+G++ AL HDVI+ LG F++ Q+E
Sbjct: 127 GPQVGKELAEQGGLAVLVALICILIYVSFRFEWRLAAGSVAALAHDVIVTLGVFSVLQLE 186

Query: 180 FNLTVFAAVLAVLGYSLNDSIIISDRIRELLLAKQQTPTADINDQAIIATFSRTMVTSGT 239
           F+LTV A +L V+GYSLND+I++ DRIRE  L  ++    ++ + +I  T SRT++T+GT
Sbjct: 187 FDLTVLAGLLTVVGYSLNDTIVVFDRIRENFLKMRKGTPEEVVNNSITQTMSRTIITTGT 246

Query: 240 TLMTISALWLMGGAPLQGFAIAMFIGIISGTWSSISIGTVLPEWLGLESKHYLPVELD 297
           TL+T+ AL+L GG  + GFA A+ +GI+ GT+SSI + + L   LG+  +H +PVE++
Sbjct: 247 TLITVVALFLKGGTLIHGFATALLLGIVVGTYSSIYVASYLAIRLGINREHMMPVEVE 304