Pairwise Alignments

Query, 300 a.a., protein translocase subunit SecF from Vibrio cholerae E7946 ATCC 55056

Subject, 853 a.a., SecD export membrane protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  152 bits (383), Expect = 3e-41
 Identities = 95/271 (35%), Positives = 144/271 (53%), Gaps = 5/271 (1%)

Query: 20  SVLLMVISLGAFAIKGLNMGLDFTGGMVTEAIINHSVTKSQLMDQLQPVLGESVSATPSG 79
           SV+L V S+  F   GLN G+DF GG V E    ++V    L   LQ +    V     G
Sbjct: 550 SVVLSVASVVLFFHPGLNYGVDFAGGTVMEVRSQNAVDFPALRTDLQSLPIGPVQLQAFG 609

Query: 80  EEGRWVIRYPLA-AEDATPVDIATELHHISDQ----VQIVSNSMVGSQVGQELIDQGGLA 134
                +IR       DA   ++  ++  + ++     +I     VG+ V  EL   G +A
Sbjct: 610 SPNDVLIRLERQEGGDAAQAEVVKQVQGMLERDYAGSEIRRVDSVGASVSAELFQDGMMA 669

Query: 135 LLICLLSILAYLSFRFEWRLASGALLALLHDVILVLGFFAITQMEFNLTVFAAVLAVLGY 194
           L +  +++L Y+ FRFEW+   GA++ +L DV   +GFFAIT M+FNLT  AA+L ++GY
Sbjct: 670 LGLAAIAMLIYIWFRFEWQFGVGAVVTMLLDVTKTVGFFAITGMQFNLTAIAAILTIMGY 729

Query: 195 SLNDSIIISDRIRELLLAKQQTPTADINDQAIIATFSRTMVTSGTTLMTISALWLMGGAP 254
           S+ND +++ DR+RE L   +  P   + D++I  T  RT+ TS  T + I  L + GG  
Sbjct: 730 SINDKVVVYDRVRENLRLYRTMPLRQLIDKSINETLGRTVGTSLATFLAIIPLAVFGGEA 789

Query: 255 LQGFAIAMFIGIISGTWSSISIGTVLPEWLG 285
           L+ FA+ +  G++  T SS+ I   L   LG
Sbjct: 790 LREFALVLLFGVVLATSSSVFIAAPLLLLLG 820



 Score = 68.9 bits (167), Expect = 4e-16
 Identities = 57/229 (24%), Positives = 110/229 (48%), Gaps = 7/229 (3%)

Query: 56  VTKSQLMDQLQPVLGESVSATPSGEE----GRWVIRYPLAAEDATPVDIATELHHISDQV 111
           VTK  +      VL + V + P   E    GR  I     A  A  + +      +   +
Sbjct: 284 VTKMAVGKPFAIVLDDKVVSAPVIREPITGGRGQISGSFTAASANDLAVLLRAGALPAPL 343

Query: 112 QIVSNSMVGSQVGQELIDQGGLALLICLLSILAYLSFRFEWRLASGALLALLHDVILVLG 171
            +V    VG  +G + I  G +A+ +  + ++AY+   F       A +AL+ ++ + LG
Sbjct: 344 TVVEERTVGPDLGADSIRAGMIAISVGFVLVVAYMGI-FYGLFGWFANVALVFNLAITLG 402

Query: 172 FFAITQMEFNLTVFAAVLAVLGYSLNDSIIISDRIRELLLAKQQTPTADINDQAIIATFS 231
             ++ Q    L   A +L  LG +++ +I+I++RIRE   AK+    A   +      F+
Sbjct: 403 ALSLMQATLTLPGIAGLLLSLGMAVDANILINERIREE--AKKGRGVAASMETGFKRAFA 460

Query: 232 RTMVTSGTTLMTISALWLMGGAPLQGFAIAMFIGIISGTWSSISIGTVL 280
               ++ TTL+ ++ L+ +G   ++GFA+ + +GII   +++I++  +L
Sbjct: 461 TIFDSNITTLIKMAILFSIGVGTIRGFAVTISLGIIVSMFTAITVTRLL 509