Pairwise Alignments

Query, 300 a.a., protein translocase subunit SecF from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., protein-export membrane protein SecF (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  219 bits (557), Expect = 8e-62
 Identities = 119/283 (42%), Positives = 176/283 (62%), Gaps = 3/283 (1%)

Query: 18  IISVLLMVISLGAFAIKGLNMGLDFTGGMVTEAIINHSVTKSQLMDQLQPVLGESVSATP 77
           I+S +L++ S+   A KGLN GLDFTGG V E   +  V  +Q   QL      S     
Sbjct: 22  IMSAVLVLGSIVLLATKGLNWGLDFTGGTVVEMSFSTPVDLNQFRSQLTTPETSSAVVQN 81

Query: 78  SGEEGRWVIRYPLA---AEDATPVDIATELHHISDQVQIVSNSMVGSQVGQELIDQGGLA 134
            G     ++R P+    + D   V+I      +   V       VG QVG+EL +QGGLA
Sbjct: 82  YGSSRDVLVRLPVKEGISSDVQVVEIVKFAQQLDPNVVQKRVEFVGPQVGKELAEQGGLA 141

Query: 135 LLICLLSILAYLSFRFEWRLASGALLALLHDVILVLGFFAITQMEFNLTVFAAVLAVLGY 194
           +L+ L+ I+ Y++FRFEWRLA+GA+ AL HDV++ LG F++TQMEF+LTV A VL V+GY
Sbjct: 142 VLVALICIMIYIAFRFEWRLATGAVAALAHDVMVTLGVFSLTQMEFDLTVLAGVLTVVGY 201

Query: 195 SLNDSIIISDRIRELLLAKQQTPTADINDQAIIATFSRTMVTSGTTLMTISALWLMGGAP 254
           SLND+I++ DR+RE  L  +++   ++ + +I  T SRT++T GTTL+ + AL+L GG+ 
Sbjct: 202 SLNDTIVVFDRVRENFLKMRKSEPEEVVNVSITQTMSRTIITMGTTLVVVVALFLSGGSM 261

Query: 255 LQGFAIAMFIGIISGTWSSISIGTVLPEWLGLESKHYLPVELD 297
           + GFA A+ +GI  GT+SS+ + T L   LG+  +  +P E++
Sbjct: 262 IHGFAAALLLGISVGTYSSVYVATYLAIKLGVNRESMMPAEIE 304