Pairwise Alignments

Query, 300 a.a., protein translocase subunit SecF from Vibrio cholerae E7946 ATCC 55056

Subject, 294 a.a., protein-export membrane protein SecF (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  337 bits (864), Expect = 2e-97
 Identities = 172/279 (61%), Positives = 219/279 (78%), Gaps = 3/279 (1%)

Query: 13  RYITGIISVLLMVISLGAFAIKGLNMGLDFTGGMVTEAIINHSVTKSQLMDQLQPVLGES 72
           RYI+  IS+ LM+ SL    +KG N GLDFTGG+VTE  ++  +T S+L   L     + 
Sbjct: 10  RYISSAISIFLMLASLTIVCVKGFNWGLDFTGGVVTEVQLDRKITSSELQPLLNAAYQQD 69

Query: 73  VSATPSGEEGRWVIRYPLAAEDATPVDIATELHHISDQVQIVSNSMVGSQVGQELIDQGG 132
           VS   + E GRWV+RY   A+  + VDIA  L  + + VQ+++ S+VG QVG+EL +QGG
Sbjct: 70  VSVISASEPGRWVLRYADTAQ--SHVDIAQTLAPLGE-VQVLNTSVVGPQVGKELAEQGG 126

Query: 133 LALLICLLSILAYLSFRFEWRLASGALLALLHDVILVLGFFAITQMEFNLTVFAAVLAVL 192
           LALL+ +L+IL YLS+RFEWRLASGAL AL+HDV+ VL FF++TQMEFNLTV AAVLA+L
Sbjct: 127 LALLVAMLAILGYLSYRFEWRLASGALFALVHDVMFVLAFFSLTQMEFNLTVLAAVLAIL 186

Query: 193 GYSLNDSIIISDRIRELLLAKQQTPTADINDQAIIATFSRTMVTSGTTLMTISALWLMGG 252
           GYSLNDSIII+DRIRELL+AK +    +IN+QAI+ATFSRTMVTSGTTLMT+ ALW+MGG
Sbjct: 187 GYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTTLMTVGALWIMGG 246

Query: 253 APLQGFAIAMFIGIISGTWSSISIGTVLPEWLGLESKHY 291
            PL+GF+IAMFIGI++GT+SSIS+GT LPE+LGL  +HY
Sbjct: 247 GPLEGFSIAMFIGILTGTFSSISVGTSLPEFLGLAPEHY 285