Pairwise Alignments

Query, 300 a.a., protein translocase subunit SecF from Vibrio cholerae E7946 ATCC 55056

Subject, 618 a.a., protein-export membrane protein SecD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 62.0 bits (149), Expect = 3e-14
 Identities = 58/262 (22%), Positives = 119/262 (45%), Gaps = 19/262 (7%)

Query: 27  SLGAFAIKGLNMGLDFTGGMVTEAIINHSVTKSQLMD-------------QLQPVLGESV 73
           ++G   +  +N+ LD  GG         ++ K                  Q Q ++  SV
Sbjct: 341 NIGEMGMAEVNIHLDRIGGQKMSEFSRANIGKPMATSYSEYSRDEQGKAKQTQEII--SV 398

Query: 74  SATPSGEEGRWVIRYPLAAEDATPVDIATELHHISDQVQIVSNSMVGSQVGQELIDQGGL 133
           +   S    R+ I      ++A  + +      ++  V IV    +G  +G E I+ G  
Sbjct: 399 ATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIENGFA 458

Query: 134 ALLICLLSILAYLSFRFEWRLASGALLALLHDVILVLGFFA-ITQMEFNLTVFAAVLAVL 192
           AL + +   L +++  +  RL   A +AL+ +++++ G  A I      L   A ++  +
Sbjct: 459 ALGLGMGITLLFMALWYR-RLGWVANVALISNMVILFGLLALIPGAVLTLPGIAGLVLTV 517

Query: 193 GYSLNDSIIISDRIRELLLAKQQTPTADINDQAIIATFSRTMVTSGTTLMTISALWLMGG 252
           G +++ +++I +RI++ L  K+    A   D    + FS     + TT++T   L+ +G 
Sbjct: 518 GMAVDTNVLIFERIKDKL--KEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIGN 575

Query: 253 APLQGFAIAMFIGIISGTWSSI 274
            P+QGFA+ + +G+++  ++ I
Sbjct: 576 GPIQGFALTLGLGLLTSMFTGI 597