Pairwise Alignments

Query, 300 a.a., protein translocase subunit SecF from Vibrio cholerae E7946 ATCC 55056

Subject, 320 a.a., protein-export membrane protein SecF (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  159 bits (401), Expect = 1e-43
 Identities = 96/278 (34%), Positives = 156/278 (56%), Gaps = 11/278 (3%)

Query: 20  SVLLMVISLGAFAIKGLNMGLDFTGGMVTEAIINHSVTKSQLMDQLQPVLGESVSAT--- 76
           S + MV SL  +   GLN G+DF GG          V  +     ++P+    +S T   
Sbjct: 25  SAVAMVASLVLWLSVGLNFGIDFLGGTTIRTESAQVVDVAAYRAAVEPLGLGDISITEVF 84

Query: 77  -PSGEEGRWVIRYPLAAEDA-------TPVDIATELHHISDQVQIVSNSMVGSQVGQELI 128
            P+    R V    + A++        T + I   L  +  ++   S   VG +V  ELI
Sbjct: 85  DPTFGPERNVAMLRIQAQEGQESVPPETILAIEEALRTVDPEMTFPSVESVGPKVSGELI 144

Query: 129 DQGGLALLICLLSILAYLSFRFEWRLASGALLALLHDVILVLGFFAITQMEFNLTVFAAV 188
               LA+   +++IL Y+  RFEW+ + GA+ AL+HDV+L +G F++ Q+ F+L   AA+
Sbjct: 145 LTAMLAVGASMVAILFYIWLRFEWQFSIGAIAALVHDVVLTIGIFSLLQIRFDLATIAAL 204

Query: 189 LAVLGYSLNDSIIISDRIRELLLAKQQTPTADINDQAIIATFSRTMVTSGTTLMTISALW 248
           L ++GYS+ND+++I DR+RE L+  ++ P  D+ + ++  T SRT++TSGTTL+ + AL 
Sbjct: 205 LTIIGYSINDTVVIFDRLRENLIKYKKKPLRDVMNLSVNETLSRTVMTSGTTLLALLALL 264

Query: 249 LMGGAPLQGFAIAMFIGIISGTWSSISIGTVLPEWLGL 286
            +GG  ++GF  A+F GII GT+SS+ +   +   LG+
Sbjct: 265 ALGGDVIRGFVFAIFWGIIVGTYSSVFVAKNIVLLLGV 302