Pairwise Alignments

Query, 300 a.a., protein translocase subunit SecF from Vibrio cholerae E7946 ATCC 55056

Subject, 1010 a.a., protein-export membrane protein SecD/SecF (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  108 bits (271), Expect = 4e-28
 Identities = 74/295 (25%), Positives = 143/295 (48%), Gaps = 36/295 (12%)

Query: 18  IISVLLMVISLGAFAIKGLNMGLDFTGGMVTEAIINHSVTKSQLMDQLQPVLGESVSATP 77
           II   ++++ +G+FA++GL+  +DFTGG   +    + V   Q+ + +    GE V+   
Sbjct: 699 IIVSAIILVCIGSFALRGLSQSIDFTGGRNFKVQFENPVEPEQVRELIADKFGEDVNVNV 758

Query: 78  SG-----------------EEGRWV----------IRYPLAAEDATPVDIATELHHISDQ 110
                              +EG  V             PL  ++ T        +H    
Sbjct: 759 IAIGTDKKTVRISTNYRIADEGNNVDSEIESYLYETLKPLLTQNITLATFIDRDNHTGGS 818

Query: 111 VQIVSNSMVGSQVGQELIDQGGLALLICLLSILAYLSFRFEWRLAS-GALLALLHDVILV 169
             IVS+  VG  +  ++      ++++ L++I  Y+  RF     S G+++AL  D I++
Sbjct: 819 --IVSSQKVGPSIADDIKTGAVWSVVLALIAIGLYILIRFRNIAYSIGSIVALTCDTIMI 876

Query: 170 LGFFAIT------QMEFNLTVFAAVLAVLGYSLNDSIIISDRIRELLLAKQQTPTADIND 223
           +G +++        +E + T   A+L  +GYS+ND ++I DR+RE      +     + +
Sbjct: 877 IGAYSLLWGIVPFSLEIDQTFIGAILTAIGYSINDKVVIFDRVREFFGLYPKRDKRQLFN 936

Query: 224 QAIIATFSRTMVTSGTTLMTISALWLMGGAPLQGFAIAMFIGIISGTWSSISIGT 278
            ++  T +RT+ TS +TL+ +  ++++GG  ++ FA AM +G++ GT SS+ I +
Sbjct: 937 DSLNTTLARTINTSLSTLIVLLCIFILGGDSIRSFAFAMILGVVIGTLSSLFIAS 991



 Score = 60.8 bits (146), Expect = 1e-13
 Identities = 56/244 (22%), Positives = 108/244 (44%), Gaps = 17/244 (6%)

Query: 56  VTKSQLMDQLQPVLGESVSATPSGEE----GRWVIRYPLAAEDATPVDIATELHHISDQV 111
           +TK  +   +  VL   V + P+       GR  I      E A  +    +   +    
Sbjct: 433 LTKQNIGRSIAIVLDNYVYSAPNVNSEITGGRSQITGHFTPEQAKDLANVLKSGKMPAPA 492

Query: 112 QIVSNSMVGSQVGQELIDQGGLALLICLLSILAYLSFRFEWRLASGALLALLHDVILVLG 171
            IV   +VG  +GQE I+ G  + ++ L+ ++ Y+   + +     A  AL  +    LG
Sbjct: 493 HIVQEDIVGPSLGQESINAGIFSFVVALILLMIYMCSMYGFIPGMVANCALFLNFFFTLG 552

Query: 172 FFAITQMEFNLTVFAAVLAVLGYSLNDSIIISDRIRELLLAKQ--QTPTADINDQAIIAT 229
             +  Q    ++  A ++  LG +++ +++I +R +E L A +  +   AD    A  A 
Sbjct: 553 ILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRAGKGVKKALADGYSNAFSAI 612

Query: 230 FSRTMVTSGTTLMTISALWLMGGAPLQGFAIAMFIGIISGTWSSISIGTVLPE------- 282
           F   +    T+++T   L+  G  P++GFA  + IGI+   ++++ +  ++ E       
Sbjct: 613 FDSNL----TSIITGIILFNFGTGPIRGFATTLIIGILVSFFTAVFMTRLVYEHFMNKDK 668

Query: 283 WLGL 286
           WL L
Sbjct: 669 WLNL 672