Pairwise Alignments

Query, 700 a.a., iron ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 293 a.a., sulfate ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  100 bits (250), Expect = 7e-26
 Identities = 64/198 (32%), Positives = 106/198 (53%), Gaps = 13/198 (6%)

Query: 500 VAAPITALFGLLIAYVVVRQQFYGKKVIEFSTMLCFAVPGTVAGVSYILAFNDAP----- 554
           + A I A+FG L+A+V+VR QF GKKV++    L FA+P  VAG++ +  ++        
Sbjct: 88  IGATINAVFGTLVAWVLVRYQFLGKKVVDALVDLPFALPTAVAGIALVTLYSTTGWVGQY 147

Query: 555 IYLTGTAAI-----VVISMVMRNVPVGIRSGIAGLGQLDKSLDEASLSLRASSLQTIRYI 609
           +YL G         VVI++    +P  +R+    L    K L+EAS SL AS   TI+ +
Sbjct: 148 LYLWGIKVAYSEIGVVIALTYIGLPFVVRTVQPVLADFSKELEEASASLGASRFTTIKRV 207

Query: 610 ILPLLRPAILSTLVYSFVRAMTTVSAIIFL---VTPETRVATSYILNRVEDGEYGIAIAY 666
           ILP + PA+L+    +F RA+    ++IF+   +   T +    I+++ E  +Y  A A 
Sbjct: 208 ILPAVLPALLTGYALAFARAVGEYGSVIFISGNLPYRTEITPLLIVSKAEQYDYNGAAAI 267

Query: 667 GSVLIVVMLAIILLFDLL 684
           G V++     ++L+ + L
Sbjct: 268 GVVMLAAAFILLLIINSL 285



 Score = 59.7 bits (143), Expect = 2e-13
 Identities = 42/198 (21%), Positives = 83/198 (41%), Gaps = 9/198 (4%)

Query: 212 VGATF---FGLIFAIYTTRIAKRSAFIARVFSILPIVTPPFIVGLGVTLMLGRSGYITEL 268
           +GAT    FG + A    R       +      LP   P  + G+ +  +   +G++ + 
Sbjct: 88  IGATINAVFGTLVAWVLVRYQFLGKKVVDALVDLPFALPTAVAGIALVTLYSTTGWVGQY 147

Query: 269 MVDGFGLQKTNWLYGFTGIWLAQVLAFAPMSFMILDGALKSLHPSLEEASYTLKANRYQT 328
           +     L      Y   G+ +A      P     +   L      LEEAS +L A+R+ T
Sbjct: 148 LY----LWGIKVAYSEIGVVIALTYIGLPFVVRTVQPVLADFSKELEEASASLGASRFTT 203

Query: 329 FFGIIMPLLKPALANSFLIIFVQSLADFSNPLVLGGS--FDVLATQIYFYIAGAQLDYAS 386
              +I+P + PAL   + + F +++ ++ + + + G+  +    T +       Q DY  
Sbjct: 204 IKRVILPAVLPALLTGYALAFARAVGEYGSVIFISGNLPYRTEITPLLIVSKAEQYDYNG 263

Query: 387 ASTLGSVLLLFSLAIFVV 404
           A+ +G V+L  +  + ++
Sbjct: 264 AAAIGVVMLAAAFILLLI 281