Pairwise Alignments

Query, 527 a.a., signal transduction histidine-protein kinase/phosphatase UhpB from Vibrio cholerae E7946 ATCC 55056

Subject, 679 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  100 bits (249), Expect = 2e-25
 Identities = 76/237 (32%), Positives = 123/237 (51%), Gaps = 14/237 (5%)

Query: 281 ISRQHQLALLLQKMNTRLAKELREKQDLARQLVSVEEQIRKSVARELHDEIGQNITAIQI 340
           +S+  QL   L+  N RL       Q L+++L+ V+E  R+ VAR+LHD++GQ++T +++
Sbjct: 448 VSQAEQLRRDLEDANQRL-------QHLSQRLIEVQEIERREVARDLHDDVGQHLTGLKL 500

Query: 341 Q-SMLAERLASNDQAKQAASSVQSLAMRIHQSTRQLLKQLRPHILDELGLEHAIRQLVQE 399
               L  R A + + ++ +  + +         R L   L P  L+ LGLE A+R  +Q 
Sbjct: 501 HLQRLIRRQAGDSEFERLSQPLVASMDAALAKVRSLSLSLHPLQLETLGLEAAVRWHLQH 560

Query: 400 MRFAEQGMTVRLNMGVNPQKLDDTTRVTLYRIVQELLNNICKHAKATRVHISLF-PGSEM 458
              A  G    L +  +  ++     V  +R+VQE +NN+ +HA+A  V I +     E+
Sbjct: 561 FLEA-SGTCWELEVRGSTTEIPPGRAVAAFRLVQEAVNNVARHARARTVRILMVCDEHEL 619

Query: 459 VLEVKDDGIGLPTDWRVRGH---GLKGLSERVSALGGQLKMTSSTFQTGTRIIVNLP 512
            LE+ DDG G      ++G    GL  + ERV++ GG L++ SS    GTRI   LP
Sbjct: 620 RLEILDDGRGFDVPEALQGAQSLGLTSMHERVASFGGDLRI-SSLPGMGTRITALLP 675