Pairwise Alignments

Query, 527 a.a., signal transduction histidine-protein kinase/phosphatase UhpB from Vibrio cholerae E7946 ATCC 55056

Subject, 805 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  102 bits (255), Expect = 4e-26
 Identities = 78/228 (34%), Positives = 120/228 (52%), Gaps = 14/228 (6%)

Query: 295 NTRLAKEL----REKQDLARQLVSVEEQIRKSVARELHDEIGQNITAIQIQSMLAE-RLA 349
           N R+  EL     + ++LA  L +V E+ +  +ARE+HDE+GQ +T +++++ + E   A
Sbjct: 565 NKRIELELDASRAQLRELAAHLETVREEEKAHIAREVHDELGQVLTVLKLETSMCELGFA 624

Query: 350 SNDQA-KQAASSVQSLAMRIHQSTRQLLKQLRPHILDELGLEHAIRQLVQEMRFAEQ-GM 407
             D A  Q   S++ L  ++ Q  R +   LRP ILD  G+  A+    Q  RF E+ G+
Sbjct: 625 DLDPALAQRLESMKRLIAQLFQRVRDVATALRPPILD-AGIASAVEW--QARRFEERSGV 681

Query: 408 TVRLNMGVNPQKLDDTTRVTLYRIVQELLNNICKHAKATRVHISL-FPGSEMVLEVKDDG 466
              + +   P  L +   + L+RI+QE L N+ +HA+A  V + L   G  + L V DDG
Sbjct: 682 ACLVEVPECPPALGNAKAIGLFRILQESLTNVMRHARAQTVSVQLQLEGDLLCLRVSDDG 741

Query: 467 IGLPTDWRVRG--HGLKGLSERVSALGGQLKMTSSTFQTGTRIIVNLP 512
            G     R  G   GL G+ ER+  LGGQL + S   + GT I   +P
Sbjct: 742 CGFADAGRSAGSSFGLVGMRERIQMLGGQLCIDSQPGE-GTTITARVP 788