Pairwise Alignments

Query, 208 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 219 a.a., Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain from Pseudomonas stutzeri RCH2

 Score =  132 bits (331), Expect = 6e-36
 Identities = 76/210 (36%), Positives = 118/210 (56%), Gaps = 5/210 (2%)

Query: 4   IALVDDHTIVRSGFAQLLNLEQDIRVQGEYESAKAAFYALTQAEVDVAIIDISMPDENGL 63
           I LVDDH +VR G+A LL          E  S + A   + Q+   + ++D+ +P  +GL
Sbjct: 3   ILLVDDHAVVRQGYASLLKALLPEVTVSEAASGEQALEQVQQSIPSLVVLDLGLPGISGL 62

Query: 64  SLLERLRQHNPRFKAIILSIYDSASFVKKALDAGAQGYLSKRCGPSELVSAIRTVASGRR 123
               RLRQ  P    +I S++D  + V++ALDAGA GYL+KRC P  LV A+R V +G+ 
Sbjct: 63  ETCRRLRQRLPLMPVLIFSMHDELALVRQALDAGASGYLTKRCAPDVLVEAVRKVLAGQT 122

Query: 124 YLCADALVNL-----SNPDINNVLADLTKREVEVFDLLVQGKEVKEIAQTLFLSHKTVHV 178
           ++      +L     S+      LA++T RE+E+F +L +G   +EIA+ L +S KTV  
Sbjct: 123 FIEQPLATDLACQRPSHSPAKGRLAEMTPREMEIFIMLARGIGNREIAERLCISSKTVSN 182

Query: 179 HRANILSKLNLTNNVDVIRFALQHQLLVEG 208
           H A + SKL +++  +++  A+   LL  G
Sbjct: 183 HMALLKSKLGVSSQAELVHLAIDLGLLRVG 212