Pairwise Alignments

Query, 208 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 214 a.a., response regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  135 bits (340), Expect = 6e-37
 Identities = 73/213 (34%), Positives = 129/213 (60%), Gaps = 6/213 (2%)

Query: 1   MITIALVDDHTIVRSGFAQLLNLEQDIRVQGEYESAKAAFYALTQAEVDVAIIDISMPDE 60
           MI++ LVDDH +VR+G  ++L  E+ I+V GE    + A     Q E DV ++D++MP  
Sbjct: 1   MISVYLVDDHELVRTGIRRILEDERGIKVVGEAPDGETAVSWSKQNEADVVLMDMNMPGI 60

Query: 61  NGLSLLERLRQHNPRFKAIILSIYDSASFVKKALDAGAQGYLSKRCGPSELVSAIRTVAS 120
            G+    ++ ++ P  + I+LS++    F  K + AGA GYL+K   P E++ AIR VA 
Sbjct: 61  GGIEATRKILRYQPHARIIVLSMHTEDPFPTKVMQAGAFGYLTKGAKPPEVLQAIRQVAC 120

Query: 121 GRRYLCAD-----ALVNLSNPDINNVLADLTKREVEVFDLLVQGKEVKEIAQTLFLSHKT 175
           G+RYL  +     AL  L+  D  N    +++RE+++  +++   +V +IA+ L LS KT
Sbjct: 121 GQRYLSPEIAQQMALSQLTQTD-ENPFKQVSERELQIAMMIINSMKVNDIAEQLNLSPKT 179

Query: 176 VHVHRANILSKLNLTNNVDVIRFALQHQLLVEG 208
           V+ +R  + +KL ++++V++ R A++H+++  G
Sbjct: 180 VNSYRYRLFAKLGISSDVELTRLAIRHKIIDPG 212