Pairwise Alignments

Query, 208 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 214 a.a., DNA-binding response regulator, LuxR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  139 bits (349), Expect = 5e-38
 Identities = 73/212 (34%), Positives = 128/212 (60%), Gaps = 4/212 (1%)

Query: 1   MITIALVDDHTIVRSGFAQLLNLEQDIRVQGEYESAKAAFYALTQAEVDVAIIDISMPDE 60
           MI+I LVDDH +VR+G  ++L  E+ I+V GE    + A     Q E DV ++D++MP  
Sbjct: 1   MISIYLVDDHELVRTGIRRILEDERGIKVVGEAPDGETAVQWARQNEADVILMDMNMPVM 60

Query: 61  NGLSLLERLRQHNPRFKAIILSIYDSASFVKKALDAGAQGYLSKRCGPSELVSAIRTVAS 120
            GL    ++ ++ P  K I+L+++    F  K + AGA GYL+K   P E++ AIR V+ 
Sbjct: 61  GGLEATRKILRYQPHAKIIVLTVHTEDPFPSKVMQAGASGYLTKGATPPEVLQAIRQVSR 120

Query: 121 GRRYLCADALVNLS----NPDINNVLADLTKREVEVFDLLVQGKEVKEIAQTLFLSHKTV 176
           G+RYL  +    ++    NP   N    L++RE+++  ++  G++V +I++ L LS KTV
Sbjct: 121 GQRYLSPEIAQQMALSQFNPADENPFKALSERELQIMLMITNGEKVNDISEQLNLSPKTV 180

Query: 177 HVHRANILSKLNLTNNVDVIRFALQHQLLVEG 208
           + +R  + +KL ++ +V++ R A+++++L  G
Sbjct: 181 NSYRYRLFAKLGISGDVELTRLAIRYKMLDAG 212