Pairwise Alignments

Query, 431 a.a., HDIG domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 357 a.a., response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 84.7 bits (208), Expect = 4e-21
 Identities = 48/111 (43%), Positives = 63/111 (56%), Gaps = 2/111 (1%)

Query: 287 VHDIGKLHTPEEILHKPGKLNESEYLCIQRHSTDSRYTLQMVFGQSVVC--EWAGNHHER 344
           +HDIGK+  P+ +L KPGKL   EY+ IQ H       +       +V   E A  HHER
Sbjct: 201 MHDIGKIGIPDAVLLKPGKLTAEEYIIIQTHPAIGAKIIGDDDDPLLVMAKEIALYHHER 260

Query: 345 LDGSGYPRGLQGAAIDLPSRIIAIADVFQALTQARPYRGSMSLNEVMNIMR 395
            DG+GYP GL    I L +RI  IADVF ALT  R Y+ + S+++  N +R
Sbjct: 261 WDGTGYPNGLSQDQIPLCARIATIADVFDALTTPRTYKTAWSIDDAFNYLR 311



 Score = 26.9 bits (58), Expect = 0.001
 Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 42  HGHRVGYMAYSCAQAMEWSEEECQLVFALGLIHDCGVAQKRDFYRL----LENMQPDNTQ 97
           H  R+    Y  A+ ++     CQL  +   +HD G     D   L    L   +    Q
Sbjct: 170 HIIRMSQYGYLLARKIDQPAHWCQLFLSAAPMHDIGKIGIPDAVLLKPGKLTAEEYIIIQ 229

Query: 98  QHCVRGNELLSNC--PPLAPFADAILYHHTPWD 128
            H   G +++ +   P L    +  LYHH  WD
Sbjct: 230 THPAIGAKIIGDDDDPLLVMAKEIALYHHERWD 262