Pairwise Alignments

Query, 829 a.a., periplasmic nitrate reductase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 905 a.a., Nitrate reductase (EC 1.7.99.4) (from data) from Pseudomonas fluorescens FW300-N2E2

 Score =  332 bits (851), Expect = 6e-95
 Identities = 240/787 (30%), Positives = 361/787 (45%), Gaps = 99/787 (12%)

Query: 48  CRFCGTGCSVLVGTQDGRVVATQGDPEAPVNKGLNCIKGYFLSKIMYGQDRLKTPLLRMK 107
           C +CG GC VL+     R++   GDP  P N G  C KG  L        R   P LR+ 
Sbjct: 10  CCYCGVGCGVLIEHDGERILGVSGDPAHPANFGKLCSKGSTLHLTGDLAARALYPELRLG 69

Query: 108 DGQYHKDGEFTPVSWDTAFDVMAEKWKASLKTKGPTSVGMFGSGQWTVMEGYAAVKLMKA 167
            G      +     WD+A D  A  +  ++   GP SV  + SGQ    + YA  KL +A
Sbjct: 70  KGLARARSD-----WDSALDHAASVFAETIAEHGPDSVAFYISGQLLTEDYYAFNKLARA 124

Query: 168 GFRSNNIDPNARHCMASAVVGFMRTFGIDEPMGCYDDFEHADAFVLWGSNMAEMHPVLWT 227
              +NNID N+R CM+SAVVG+ R+ G D P   Y+D E +D  ++ GSNMA  HP+L+ 
Sbjct: 125 LVGTNNIDSNSRLCMSSAVVGYKRSLGADAPPCSYEDLEMSDCVMIVGSNMAYAHPILFR 184

Query: 228 RITDRRLSHPHVKVNVLSTYYHRSFELADHGYIFHPQSDLAIANFIANYIIQNDAVNWDF 287
           R+ + +   P +K+ V+      + +LAD      P +D+A+ + I + ++  D V+ DF
Sbjct: 185 RLEEAKSRRPQMKIIVIDPRRTDTCDLADLHLAILPGTDVALFHGILHLLLWEDWVDRDF 244

Query: 288 VNKHTHFKQAVTDIGYGLRDDHPLQKKAKNANSGDVSDISFEEYKKSVAPYTVEKASEIS 347
           +  HT           GL D                        K  V  Y     +++ 
Sbjct: 245 IKAHTE----------GLAD-----------------------LKNLVRDYIPSMVAQLC 271

Query: 348 GVSPDKLITLAKQYADPNTKVMSLWTMGMNQHTRGVWMQSLVYNLHLLTGKIATPGNSPF 407
           G+S ++L  L  ++   +   +SLW MG+NQ T G    S + NLHL TG+I  PG  PF
Sbjct: 272 GISVEQL-HLCAEWVGTSPSFLSLWCMGLNQSTAGSAKNSALINLHLATGQIGRPGAGPF 330

Query: 408 SLTGQPSACGTAREVGTFAHRLPADMVVANPKHRAIAEKVWKLPEGTIPEKPGFHAVQQD 467
           SLTGQP+A G  RE G+ ++ LP     ANP+HRA   + W + +  +P   G  A++  
Sbjct: 331 SLTGQPNAMG-GRETGSLSNLLPGHREAANPEHRADVARYWGVEQ--LPATTGLSAIELF 387

Query: 468 RMLKDGVLNCYWVQCNNNMQAGPNINEERLPGYRNPENFIVVSDAYPTV-TAQAADLVLP 526
             ++ G +   W+ C N  Q+ P+    R      P  F+V+ +A+ T  TA  ADL+LP
Sbjct: 388 EQVRSGKIKALWIACTNPAQSMPDQTAVREALQACP--FVVLQEAFRTTETAAFADLLLP 445

Query: 527 TAMWVEKEGAYGNAERRTQVWYQQVKTVGESHSDSWQVIEFSKRFKVEDVWPEELLAKAP 586
            A W EKEG+  N+ERR     + +   GE+ +D    ++F++R                
Sbjct: 446 AASWGEKEGSVTNSERRISHVRRAIGAPGEARADWAITVDFAQRL--------------- 490

Query: 587 QYRGKTLYDVLFKNGQVDKFPLSEARELNDDAHHFGFYIQKGLFEEYAEFGRGHGHDLAP 646
                                  E R        F F     LF+EY +  RG   DL+ 
Sbjct: 491 -----------------------EKRLRPGQPSLFAFETPAQLFDEYKQLTRGRDLDLS- 526

Query: 647 YDVYHQVRGLRWPVVDG-KETKWRFKEGSDPYAKAGSGWDFYGKPDGKAWIISSPYEAPP 705
                   G+   ++D     +W F EG+            +    G+A  ++ PY A  
Sbjct: 527 --------GISHALIDQLGPQQWPFPEGATVGTARLYVDGIFPTDSGRARFVADPYRAAK 578

Query: 706 EMPNEEYDLWLCTGRVLEHWHTGTMTRRVPELYKAVPDALCFMHHEDAQARGLRRGDEVL 765
           E+ +  Y L L TGR+ + WH  + T    +L+  V +A+  +H ++ Q   L+ GD V 
Sbjct: 579 ELRDARYPLTLNTGRLRDQWHGMSRTGTAAQLFGHVNEAVLSLHPDELQRHRLQAGDLVS 638

Query: 766 ISNSRGEVRVRVETRGRNKPPKGLVFVPF-FDARIL---VNKLILDATDPLSKQTDFKKC 821
           + + RG V V V++    +P  G  F+P  +  R L   VN L   A DPLSKQ + K  
Sbjct: 639 LKSRRGSVIVAVDSDDSVRP--GQAFLPMHWGDRFLKGGVNTLTQPAFDPLSKQPELKHS 696

Query: 822 PVKITKV 828
            V++  V
Sbjct: 697 GVRLEPV 703