Pairwise Alignments

Query, 829 a.a., periplasmic nitrate reductase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 950 a.a., formate dehydrogenase, alpha subunit (RefSeq) from Shewanella amazonensis SB2B

 Score =  113 bits (282), Expect = 6e-29
 Identities = 138/592 (23%), Positives = 232/592 (39%), Gaps = 86/592 (14%)

Query: 3   MTRRAFVKANAAASAAAVAGITLPASATNLIASSD---QTAIHWDKAPCRFCGTGCSVLV 59
           M+RR F+K    A+    A   L         + D      I   +  C  C  GC +  
Sbjct: 20  MSRRQFMKTAGIATGGIAAASMLGTGMMRRAEAKDVPHDAPIEIKRTICSACAVGCGLYA 79

Query: 60  GTQDGRVVATQGDPEAPVNKGLNCIKGYFLSKIMYGQDRLKTPLLRMKDGQYHKDGEFTP 119
             Q+G     +   + P N G +C KG  L +  +G+ RLK P+ +++ G++ +      
Sbjct: 80  EVQNGVWTGQEPAFDHPFNAGGHCAKGAALREHGHGEKRLKYPM-KLEGGKWKR------ 132

Query: 120 VSWDTAFDVMAEKWKASLKTKGPTSVGMFGSGQWTVMEGYAAVKLMKAGFRSNNIDPNAR 179
           +SW+ A + + +K     +  GP SV   GS +++  EG    + + A + +NN+D +AR
Sbjct: 133 ISWEQAINEVGDKMLNIRQESGPDSVYFMGSAKFS-NEGCYMYRKLAAMWGTNNVDHSAR 191

Query: 180 HCMASAVVGFMRTFGIDEPMGCYDDFEHADAFVLWGSNMAEMHPVLWTRITDRRLSHPHV 239
            C ++ V G   T+G       ++D ++A A    G+N AE HPV    I   +    + 
Sbjct: 192 ICHSTTVAGVANTWGYGAQTNSFNDIQNARAIFFIGANPAEAHPVSMQHILTAK-ERNNA 250

Query: 240 KVNVLSTYYHRSFELADHGYIFHPQSDLAIANFIANYIIQNDAVNWDFVNKHTHFKQAVT 299
           K+ V+   + R+   AD      P +D+     +  +I +N   +  F+++         
Sbjct: 251 KIIVVDPRFSRTAAHADLHVGIRPGTDIPFIYGMLWHIFENGWEDKTFIDQRV------- 303

Query: 300 DIGYGLRDDHPLQKKAKNANSGDVSDISFEEYKKSVAPYTVEKASEISGVSPDKLITLAK 359
              +G+                   D   EE KK    +  ++ ++I+GVS + +   AK
Sbjct: 304 ---FGM-------------------DKIREEAKK----FPPKEVADITGVSEEAIYQAAK 337

Query: 360 QYADPNTKVMSLWTMGMNQHTRGVWMQSLVYNLHLLTGKIATPGNSPFSLTGQPSACGTA 419
             AD N     +W MG  QH  G         L L  G +   G       G  +  G A
Sbjct: 338 LMAD-NRPGTVVWCMGGTQHHVGNANTRAYSILQLALGNMGVSGGGTNIFRGHDNVQG-A 395

Query: 420 REVGTFAHRLPA--DMVVANPKHRAIAEKVWKL---------PEGT-----------IPE 457
            ++G     LP    +  A  +H      VW L           GT           IP 
Sbjct: 396 TDLGLLFDNLPGYYGLTSAAWQHWT---HVWDLDLEWVKGRFDHGTYLGREPMTTPGIPC 452

Query: 458 KPGFHAVQQDR---MLKDGV-LNCYWVQCNNNMQAGPNINEERLPGYRNPENFIVVSDAY 513
                 V +D+     KD + L  +W Q  N         +  +    +  + +VV D +
Sbjct: 453 SRWHDGVLEDKAKLAQKDNIRLAFFWGQSVNT-----ETRQREVRDALDKMDTVVVVDPF 507

Query: 514 PTVTA-----QAADLVLPTAMWVEKEGAYGNAERRTQVWYQQVKTVGESHSD 560
           PT+       +    +LP A   E  G+  N+ R  Q   Q ++ + ES +D
Sbjct: 508 PTMAGVMHRRKDGVYLLPAATQFETRGSISNSGRSIQWREQVIEPLFESKTD 559



 Score = 36.6 bits (83), Expect = 7e-06
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 3/90 (3%)

Query: 712 YDLWLCTGRVLEHWHTGTMTRRVPELYKAVPDALCFMHHEDAQARGLRRGDEVLISNSR- 770
           Y L L +GR++E+   G  +R  P L +   +    ++  DA  RG+R  D V +     
Sbjct: 814 YPLVLTSGRLVEYEGGGEESRSNPWLAELQQEMFVEINPGDAADRGIRNNDNVWLEGPEG 873

Query: 771 GEVRVRVETRGRNKPPKGLVFVPFFDARIL 800
           G + ++     R KP  G+ F+P+  A ++
Sbjct: 874 GRILIKALVTPRVKP--GVTFMPYHFAGVM 901