Pairwise Alignments

Query, 829 a.a., periplasmic nitrate reductase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 674 a.a., formate dehydrogenase H subunit alpha selenocysteine-containing from Methanococcus maripaludis S2

 Score =  273 bits (699), Expect = 2e-77
 Identities = 228/787 (28%), Positives = 345/787 (43%), Gaps = 128/787 (16%)

Query: 48  CRFCGTGCSVLVGTQDGRVVATQGDPEAPVNKGLNCIKGYFLSKIMYGQDRLKTPLLRMK 107
           C +CGTGC V +  +DG +V T      PVN+G  CIKG +  + ++  DRLKTPL+R  
Sbjct: 10  CPYCGTGCGVDLVVKDGTLVGTNPFKRHPVNEGKTCIKGSYCHEFVHRDDRLKTPLIR-- 67

Query: 108 DGQYHKDGEFTPVSWDTAFDVMAEKWKASLKTKGPTSVGMFGSGQWTVMEGYAAVKLMKA 167
                K+GE    SWD A ++++ K    L+   P  VG F S + T  + Y   K  + 
Sbjct: 68  -----KNGELVEASWDEALELISGK----LQNYSPEEVGFFSSARCTNEDNYVFQKFART 118

Query: 168 GFRSNNIDPNARHCMASAVVGFMRTFGIDEPMGCYDDFEHADAFVLWGSNMAEMHPVLWT 227
             ++NN+D  AR   ++ VVG  + FG         D E AD   + GSN  E HP++  
Sbjct: 119 VIKTNNVDHCARL*HSATVVGLGQAFGSGAMTNSISDIEDADCIFIIGSNTFEQHPLIAR 178

Query: 228 RITDRRLSHPHVKVNVLSTYYHRSFELADHGYIFHPQSDLAIANFIANYIIQNDAVNWDF 287
           R+   R      K+ V+   Y  + + AD      P +++A+ N I + +++ + V+ +F
Sbjct: 179 RVV--RAKEKGTKIIVIDPRYTPTAKQADLYLQLLPGTNIAVLNAIMHVLVKENLVDEEF 236

Query: 288 VNKHTHFKQAVTDIGYGLRDDHPLQKKAKNANSGDVSDISFEEYKKSVAPYTVEKASEIS 347
           +                           KN   G      +EE K ++  YT E AS++S
Sbjct: 237 I---------------------------KNRTKG------YEELKTTLETYTPEYASKLS 263

Query: 348 GVSPDKLITLAKQYADPNTKVMSLWTMGMNQHTRGVWMQSLVYNLHLLTGKIATPGNSPF 407
           GV+P+ ++  AK Y   N   + L+ MG+ Q T GV       NL ++TG I  PG    
Sbjct: 264 GVAPELIVEAAKMYGSANAASI-LYCMGITQFTTGVNNVKSCCNLAMITGNIGKPGTGVN 322

Query: 408 SLTGQPSACGTAREVGTFAHRLPADMVVANPKHRAIAEKVWKLPEGTIPEKPGFHAVQQD 467
            L GQ +  G A ++G   +  P    V    H   AE  W          P       D
Sbjct: 323 PLRGQNNVQG-ACDMGALPNVFPGYQAVP-ANHEKYAE-AWNTCVD-----PNVGLSIPD 374

Query: 468 RMLKDGV-LNCYWVQCNNNMQAGPNIN--EERLPGYRNPENFIVVSDAYPTVTAQAADLV 524
            + K G  + C +V   N M + P+I+  E  L       + ++V D + T TAQ AD+V
Sbjct: 375 MLAKAGEQVKCIYVMGENPMVSDPDIHHVEHALKSL----DLLIVQDIFLTETAQVADVV 430

Query: 525 LPTAMWVEKEGAYGNAERRTQVWYQQVKTVGESHSDSWQVIEFSKRFKVEDVWPEELLAK 584
           LP A W EK+G + N ERR Q   + V + GE+ +D W+++              ++LA+
Sbjct: 431 LPGASWAEKDGTFSNTERRIQKINKAVDSPGEAIAD-WKIV--------------KMLAE 475

Query: 585 APQYRGKTLYDVLFKNGQVDKFPLSEARELNDDAHHFGFYIQKGLFEEYAEFGRGHGHDL 644
                         K GQ + F  + A E               +F+E A+    +    
Sbjct: 476 --------------KMGQGELFNFNTAEE---------------VFQEIAKVTPQYAG-- 504

Query: 645 APYDVYHQVRGLRWPVVDGKETKWRFKEGSDPYAKAGSGWDF---YGKPDGKAWIISSPY 701
             Y+    V GL WP    ++               G G  F   Y  PD  A       
Sbjct: 505 VTYERL-GVDGLHWPCKTCEDPGTPILHCEKCLTPDGLGNIFAIDYADPDEMA------- 556

Query: 702 EAPPEMPNEEYDLWLCTGRVLEHWHTGTMTRRVPELYKAVPDALCFMHHEDAQARGLRRG 761
                  + EY + L TGR++ H+HTGTMTRR   +   + +    +H EDA+  G++  
Sbjct: 557 -------DSEYPMTLTTGRIIFHYHTGTMTRRSKHMADEINEGFVEIHPEDAEKMGIKNK 609

Query: 762 DEVLISNSRGEVRVRVETRGRNKPPKGLVFVPFFDARILVNKLILDATDPLSKQTDFKKC 821
            +V +S  RGEV V  +     K  +G+VF+PF  A    N L   A DP  K  ++K C
Sbjct: 610 QKVKVSTRRGEVVVNAKITPNIK--QGVVFMPFHFAETAANILTNPAQDPNCKIPEYKVC 667

Query: 822 PVKITKV 828
             K+ K+
Sbjct: 668 AAKVEKI 674