Pairwise Alignments

Query, 829 a.a., periplasmic nitrate reductase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 950 a.a., formate dehydrogenase, alpha subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  116 bits (290), Expect = 7e-30
 Identities = 136/609 (22%), Positives = 243/609 (39%), Gaps = 86/609 (14%)

Query: 3   MTRRAFVKANAAASAAAVAGITLPASATNLIASSD---QTAIHWDKAPCRFCGTGCSVLV 59
           ++RR F+K    A+    A   +         + D      I   +  C  C  GC +  
Sbjct: 20  ISRRQFMKQAGIATGGIAAASLMGTGMMRRAEAKDVPYDAPIEIKRTICSACAVGCGLYA 79

Query: 60  GTQDGRVVATQGDPEAPVNKGLNCIKGYFLSKIMYGQDRLKTPLLRMKDGQYHKDGEFTP 119
             Q+G     +   + P N G +C KG  L +  +G+ RLK P+ ++ DG++ K      
Sbjct: 80  EVQNGVWTGQEPAFDHPFNAGGHCAKGAALREHGHGEKRLKYPM-KLVDGKWKK------ 132

Query: 120 VSWDTAFDVMAEKWKASLKTKGPTSVGMFGSGQWTVMEGYAAVKLMKAGFRSNNIDPNAR 179
           +SW+ A + + ++     K  GP SV   GS +++  EG  A + + A + +NN+D +AR
Sbjct: 133 ISWEDAINEVGDQMLNIRKESGPDSVYFMGSAKFS-NEGCYAYRKLAAMWGTNNVDHSAR 191

Query: 180 HCMASAVVGFMRTFGIDEPMGCYDDFEHADAFVLWGSNMAEMHPVLWTRITDRRLSHPHV 239
            C ++ V G   T+G       ++D ++A+A  L G+N AE HPV    I   +  + + 
Sbjct: 192 ICHSTTVAGVANTWGYGAQTNSFNDIQNANAIFLIGANPAEAHPVSMQHILIAKEKN-NA 250

Query: 240 KVNVLSTYYHRSFELADHGYIFHPQSDLAIANFIANYIIQNDAVNWDFVNKHTHFKQAVT 299
           K+ V+   + R+   +D      P +D+     +  +I +N   +  F+ +H  F+    
Sbjct: 251 KIIVVDPRFSRTAAHSDLHCAIRPGTDIPFIYGMLWHIFENGWEDKTFI-QHRVFE---- 305

Query: 300 DIGYGLRDDHPLQKKAKNANSGDVSDISFEEYKKSVAPYTVEKASEISGVSPDKLITLAK 359
                                        E  +  V  +  ++ + I+GVS + +   AK
Sbjct: 306 ----------------------------METIRAEVKKFPPKEVANITGVSEEVVYQAAK 337

Query: 360 QYADPNTKVMSLWTMGMNQHTRGVWMQSLVYNLHLLTGKIATPGNSPFSLTGQPSACGTA 419
             A+ N     +W MG  QH  G         L L  G +   G       G  +    A
Sbjct: 338 LMAE-NRPGTVIWCMGGTQHHVGNANTRAYCILQLALGNMGVSGGGTNIFRGHDNV-QAA 395

Query: 420 REVGTFAHRLPA--DMVVANPKHRAIAEKVWKL---------PEGT-----------IPE 457
            ++G     LP    +  A  +H      VW+L           GT           +P 
Sbjct: 396 TDLGLLFDNLPGYYGLTTAAWEHWT---NVWELDMEWMKSRFDHGTYLGREPMTTPGMPC 452

Query: 458 KPGFHAV--QQDRML-KDGV-LNCYWVQCNNNMQAGPNINEERLPGYRNPENFIVVSDAY 513
              F  V  ++D++  KD + +  +W Q  N      ++ +       +  + +VV D +
Sbjct: 453 SRWFDGVLLEKDKLAQKDNIRMAFFWGQSVNTGTRQRDVRDA-----LDKLDTVVVVDPF 507

Query: 514 PTV-----TAQAADLVLPTAMWVEKEGAYGNAERRTQVWYQQVKTVGESHSDSWQVIEFS 568
           PT+     + +    +LP     E  GA  N+ R  Q   Q ++ + ES +D   +   +
Sbjct: 508 PTIAGIMHSRKNGVYLLPACTQFEASGAVSNSGRSIQWREQVIQPLFESKNDIEIMYMLA 567

Query: 569 KRFKVEDVW 577
           K+  + + W
Sbjct: 568 KKVGISEQW 576