Pairwise Alignments

Query, 829 a.a., periplasmic nitrate reductase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 949 a.a., formate dehydrogenase, alpha subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  114 bits (285), Expect = 3e-29
 Identities = 138/605 (22%), Positives = 231/605 (38%), Gaps = 85/605 (14%)

Query: 3   MTRRAFVKANAAASAAAVAGITLPASATNLIASSD---QTAIHWDKAPCRFCGTGCSVLV 59
           + RR F+K+   A+    A   L         + D          +  C  C  GC V  
Sbjct: 20  LNRRQFLKSAGLATGGIAAASMLGTGMMRKAEAKDIPHNAPTEVKRTICSHCSVGCGVYA 79

Query: 60  GTQDGRVVATQGDPEAPVNKGLNCIKGYFLSKIMYGQDRLKTPLLRMKDGQYHKDGEFTP 119
             Q+G     +   + P N+G +C KG  L +  +G+ RLK P+ +++ G++ K      
Sbjct: 80  EVQNGVWTGQEPAFDHPFNQGGHCAKGAALREHGHGEKRLKYPM-KLEGGKWKK------ 132

Query: 120 VSWDTAFDVMAEKWKASLKTKGPTSVGMFGSGQWTVMEGYAAVKLMKAGFRSNNIDPNAR 179
           +SWD A + + +K  A  +  GP S+   GS +++  + Y   K   A + +NN+D +AR
Sbjct: 133 ISWDQAINEVGDKMMAIRQESGPDSIYFMGSAKFSNEQAYLYRKFA-ALWGTNNVDHSAR 191

Query: 180 HCMASAVVGFMRTFGIDEPMGCYDDFEHADAFVLWGSNMAEMHPVLWTRITDRRLSHPHV 239
            C ++ V G   T+G        +D  H+   +  GSN +E HPV    I   +      
Sbjct: 192 ICHSTTVAGVANTWGYGAQTNSVNDIRHSKCILFVGSNPSEAHPVAMQHILVAK--ERGA 249

Query: 240 KVNVLSTYYHRSFELADHGYIFHPQSDLAIANFIANYIIQNDAVNWDFVNKHTHFKQAVT 299
           K+ V+   + R+   +D      P +D+     +  +I +N   + DF+ +         
Sbjct: 250 KIIVVDPRFTRTAAKSDEYVHIRPGTDIPFIYGLLWHIFENGWEDKDFIKRRV------- 302

Query: 300 DIGYGLRDDHPLQKKAKNANSGDVSDISFEEYKKSVAPYTVEKASEISGVSPDKLITLAK 359
              YG+                       E  ++ V  YT E+   + G    ++  +AK
Sbjct: 303 ---YGM-----------------------ERIREEVKKYTPEEVENVVGAPKAQMYRVAK 336

Query: 360 QYADPNTKVMSL-WTMGMNQHTRGVWMQSLVYNLHLLTGKIATPGNSPFSLTGQPSACGT 418
             A+  TK  S+ W MG  QH  G         L L  G +   G       G  +  G 
Sbjct: 337 MMAE--TKPGSIVWCMGGTQHHVGNANTRSYCILQLALGNMGVTGGGTNIFRGHDNVQG- 393

Query: 419 AREVGTFAHRLPADMVVANPKHRAIAEKVWKLPE-------------GTIPE-KPGFHAV 464
           A + G     LP    + +      A  VW L               G  P+  PG    
Sbjct: 394 ASDFGLSFDDLPGYFGLTSGSWAHWA-NVWDLDPKWVTSRFDQGEYLGQSPQTSPGIPCS 452

Query: 465 Q-QDRMLKDGV---------LNCYWVQCNNNMQAGPNINEERLPGYRNPENFIVVSDAYP 514
           +  D +L+D           L  +W Q  N    G  + +       +  + +VV D +P
Sbjct: 453 RWHDGVLEDKTKIAQKDNIRLAFFWGQSVNTETRGREVRQA-----LDKMDTVVVVDPFP 507

Query: 515 T---VTAQAAD--LVLPTAMWVEKEGAYGNAERRTQVWYQQVKTVGESHSDSWQVIEFSK 569
           T   V  Q  D   +LP A   E  G+     R  Q   + ++ + ES  D   + + +K
Sbjct: 508 TMAGVMHQRKDGVYLLPAATQFETYGSVSATNRSIQWRSKVIEPLFESLPDHVIMCKLAK 567

Query: 570 RFKVE 574
           +  ++
Sbjct: 568 KVGID 572



 Score = 36.6 bits (83), Expect = 7e-06
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%)

Query: 710 EEYDLWLCTGRVLEHWHTGTMTRRVPELYKAVPDALCFMHHEDAQARGLRRGDEVLISNS 769
           +++ L L +GR++E+   G  TR  P L +   +    +   DA  RG+R GD V + + 
Sbjct: 811 KDFPLALTSGRLVEYEGGGEETRSNPWLAELQQEMFIEISPADAADRGIRDGDNVFVHSP 870

Query: 770 RGEVRVRVETRGRNKPPKGLVFVPFFDARI 799
            G  ++ V+     +   G  F+P+  A +
Sbjct: 871 EG-AKITVKAMVTPRVVPGECFMPYHFAGV 899