Pairwise Alignments

Query, 829 a.a., periplasmic nitrate reductase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1428 a.a., formate dehydrogenase, alpha subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  165 bits (417), Expect = 2e-44
 Identities = 141/552 (25%), Positives = 240/552 (43%), Gaps = 56/552 (10%)

Query: 48   CRFCGTGC--SVLVGTQDGRVVATQGDPEAPVNKGLNCIKGYFLSKIMYGQDRLKTPLLR 105
            C +CG GC   + +     R+   +G+ ++ VN+G+ C+KG F    ++   RL TPL+R
Sbjct: 742  CTYCGVGCRLDLKIDPSTNRIRHIEGNKDSVVNQGMLCVKGRFGFDFIHSDKRLTTPLIR 801

Query: 106  MKDGQYHKDGEFTPVSWDTAFDVMAEKWKASLKTKGPTSVGMFGSGQWTVMEGYAAVKLM 165
                   K+G+  P SW  A D +A++     +  G  +     S + T  + +   K +
Sbjct: 802  -------KNGKLQPCSWPEAIDYVAKRLTEIKQKDGSNAFASLASAKATNEDNFVLQKFV 854

Query: 166  KAGFRSNNIDPNARHCMASAVVGFMRTFGIDEPMGCYDDFEHADAFVLWGSNMAEMHPVL 225
            ++   +NNID  AR C +S V G  ++ G           + +D   + GS+    HP++
Sbjct: 855  RSVLGTNNIDHCARLCHSSTVTGLQQSIGSGAMTNDILSIKDSDVIFILGSDTTCAHPII 914

Query: 226  WTRITDRRLSHPHVKVNVLSTYYHRSFELADHGYIFHPQSDLAIANFIANYIIQNDAVNW 285
             ++I  + ++    ++ V         E A+      P +D+ + N I   II+N+  + 
Sbjct: 915  ASKI-QQAVNLYGARLIVADPKRVGIAEKAELYVAHRPGTDVMLLNAIMAEIIRNNWQDK 973

Query: 286  DFVNKHTHFKQAVTDIGYGLRDDHPLQKKAKNANSGDVSDISFEEYKKSVAPYTVEKASE 345
            D++ K T   +A+                             + E  K    Y++EKA+ 
Sbjct: 974  DYIAKRTEGIEAL-----------------------------YAELAKE--DYSLEKAAL 1002

Query: 346  ISGVSPDKLITLAKQYADPNTKVMSLWTMGMNQHTRGVWMQSLVYNLHLLTGKIATPGNS 405
            I+GV  + +  +A+       K    + MG+ QHT G    + + NL LL G I   G  
Sbjct: 1003 ITGVKAENIARIARTIGTAQ-KTAVYYAMGITQHTTGHDNVTAISNLQLLCGNIGVSGAG 1061

Query: 406  PFSLTGQPSACGTAREVGTFAHRLPADMVVANPKHRAIAEKVWKLPEGTIPEKPGFHAVQ 465
               L GQ +  G A ++G   +       V +   R   E  W+ P   +  + G  A  
Sbjct: 1062 INPLRGQSNVQG-ACDMGALPNYFTGYQKVTDIHARMRFESHWQTP---LSGEIGVTATH 1117

Query: 466  QDRMLKDGVLNCYWVQCNNNMQAGPNINEERLPGYRNPENFIVVSDAYPTVTAQAADLVL 525
                +  G +N  +V   N + + P  ++  +    +   F+VV D + T TA+ A +VL
Sbjct: 1118 MMHDIAKGKINALYVMGENPVLSDP--DQAHVLNALSQIEFLVVQDIFLTETAELAHVVL 1175

Query: 526  PTAMWVEKEGAYGNAERRTQVWYQQVKTVGESHSDSWQVIEFSKR-------FKVEDVWP 578
            P A +VEK G + N ERR Q   Q + + GE+  D WQ+++           +K E    
Sbjct: 1176 PAAAFVEKRGHFTNTERRVQRLEQALASPGEALPD-WQIVQAIANAMGANWDYKDEAAIW 1234

Query: 579  EELLAKAPQYRG 590
             E+ A  PQYRG
Sbjct: 1235 AEINALTPQYRG 1246



 Score = 88.2 bits (217), Expect = 3e-21
 Identities = 47/129 (36%), Positives = 74/129 (57%), Gaps = 5/129 (3%)

Query: 701  YEAPPEMPNEEYDLWLCTGRVLEHWHTGTMTRRVPEL-YKAVPDALCFMHHEDAQARGLR 759
            Y  P EMP  EY L L TGR+LE +HTGT+TR+ P L     P  +  ++  DA+  G+ 
Sbjct: 1296 YRLPAEMPCNEYPLTLSTGRLLEQFHTGTLTRKTPGLDLLGAPKVMISVY--DAEQLGIN 1353

Query: 760  RGDEVLISNSRGEVRVRVETRGRNKPPKGLVFVPFFDARILVNKLILDATDPLSKQTDFK 819
             GD++ ++  RGE+ +      R +   G++F+PF       NKL ++A DP++   ++K
Sbjct: 1354 NGDKIRLTTRRGEIEIDAFVTKRAQ--AGVLFLPFHFVEAAANKLTINALDPVAYIPEYK 1411

Query: 820  KCPVKITKV 828
             C V++ KV
Sbjct: 1412 VCAVRVEKV 1420