Pairwise Alignments

Query, 829 a.a., periplasmic nitrate reductase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 826 a.a., periplasmic nitrate reductase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1293 bits (3346), Expect = 0.0
 Identities = 605/828 (73%), Positives = 700/828 (84%), Gaps = 4/828 (0%)

Query: 1   MKMTRRAFVKANAAASAAAVAGITLPASATNLIASSDQTAIHWDKAPCRFCGTGCSVLVG 60
           M ++RR F+KANAA +AA   G+TLP     ++ +++   I WDKAPCRFCG GCSVLVG
Sbjct: 1   MSISRREFLKANAAVAAATAVGVTLPVK---MVEAAESDNIKWDKAPCRFCGVGCSVLVG 57

Query: 61  TQDGRVVATQGDPEAPVNKGLNCIKGYFLSKIMYGQDRLKTPLLRMKDGQYHKDGEFTPV 120
           T+ G+VVAT+GDPE+PVN+GLNCIKGYFLSKIMYG+DRL TPLLRMKDG+YHK+GEFTPV
Sbjct: 58  TKAGKVVATKGDPESPVNRGLNCIKGYFLSKIMYGKDRLTTPLLRMKDGKYHKEGEFTPV 117

Query: 121 SWDTAFDVMAEKWKASLKTKGPTSVGMFGSGQWTVMEGYAAVKLMKAGFRSNNIDPNARH 180
           SWD AFD MA KWK S+ TKGPTSVGMFGSGQWT+ EGYAA KL KAGF +NNIDPNARH
Sbjct: 118 SWDVAFDTMAAKWKHSIATKGPTSVGMFGSGQWTIWEGYAASKLHKAGFLTNNIDPNARH 177

Query: 181 CMASAVVGFMRTFGIDEPMGCYDDFEHADAFVLWGSNMAEMHPVLWTRITDRRLSHPHVK 240
           CMASAVVGFMRTFGIDEPMGCYDD E AD FVLWG+NMAEMHP+LW R++DRRLS    +
Sbjct: 178 CMASAVVGFMRTFGIDEPMGCYDDLEAADHFVLWGANMAEMHPILWARLSDRRLSSKDCR 237

Query: 241 VNVLSTYYHRSFELADHGYIFHPQSDLAIANFIANYIIQNDAVNWDFVNKHTHFKQAVTD 300
           V+VLST+ +RSF+LAD+  +FHPQSDL I N+IANYIIQN AVN DFV KHT F   V D
Sbjct: 238 VHVLSTFENRSFDLADNPMVFHPQSDLVILNYIANYIIQNKAVNTDFVTKHTKFALGVDD 297

Query: 301 IGYGLRDDHPLQKKAKNANSGDVSDISFEEYKKSVAPYTVEKASEISGVSPDKLITLAKQ 360
           IGYGLR DHPL+KKAKN  +G  + ISF+EY K V+ YT+E A+++SGV P+KL TLAK 
Sbjct: 298 IGYGLRPDHPLEKKAKNPGNGKSTPISFDEYAKFVSTYTLEYAAKMSGVEPEKLETLAKA 357

Query: 361 YADPNTKVMSLWTMGMNQHTRGVWMQSLVYNLHLLTGKIATPGNSPFSLTGQPSACGTAR 420
           YADP  KVMSLWTMG+NQH RGVW  +++YN+HLLTGKIATPGNSPFSLTGQPSACGTAR
Sbjct: 358 YADPKAKVMSLWTMGINQHVRGVWANNMLYNIHLLTGKIATPGNSPFSLTGQPSACGTAR 417

Query: 421 EVGTFAHRLPADMVVANPKHRAIAEKVWKLPEGTIPEKPGFHAVQQDRMLKDGVLNCYWV 480
           EVGTFAHRLPADMVV N KHRAI EK+W++PEGTIP KPG+HAV Q RMLKDG LNCYW 
Sbjct: 418 EVGTFAHRLPADMVVDNDKHRAITEKMWQVPEGTIPPKPGYHAVLQSRMLKDGKLNCYWT 477

Query: 481 QCNNNMQAGPNINEERLPGYRNPENFIVVSDAYPTVTAQAADLVLPTAMWVEKEGAYGNA 540
            C NNMQAGPNINEE  PG+RNPENFIVVSD YPTVTA AADL+LPTAMWVEKEGAYGNA
Sbjct: 478 MCTNNMQAGPNINEEMYPGFRNPENFIVVSDPYPTVTAMAADLILPTAMWVEKEGAYGNA 537

Query: 541 ERRTQVWYQQVKTVGESHSDSWQVIEFSKRFKVEDVWPEELLAKAPQYRGKTLYDVLFKN 600
           ERRT +W+QQVK    + SD WQ++EFSKRFKV +VWP EL+AK P+Y  KTLY+VLF N
Sbjct: 538 ERRTHMWHQQVKAPEGAKSDLWQLVEFSKRFKVAEVWPAELIAKKPEYADKTLYEVLFAN 597

Query: 601 GQVDKFPLSEAR-ELNDDAHHFGFYIQKGLFEEYAEFGRGHGHDLAPYDVYHQVRGLRWP 659
           G ++KFP ++ + +LND++ HF FY+QKG+FEEYA FGRGHGHDLA +D YH+ RGLRWP
Sbjct: 598 GVINKFPTTDCKGDLNDESEHFSFYVQKGIFEEYAAFGRGHGHDLAEFDRYHETRGLRWP 657

Query: 660 VVDGKETKWRFKEGSDPYAKAGSGWDFYGKPDGKAWIISSPYEAPPEMPNEEYDLWLCTG 719
           VV+ KET  RF EGSDPY KAG G++FYGKPDGKA I + PYE   E PN EYDLW+ TG
Sbjct: 658 VVNDKETLRRFVEGSDPYVKAGEGYNFYGKPDGKAVIFALPYEPAAEEPNSEYDLWMSTG 717

Query: 720 RVLEHWHTGTMTRRVPELYKAVPDALCFMHHEDAQARGLRRGDEVLISNSRGEVRVRVET 779
           RVLEHWHTG+MT RVPELY+A PDA  FMH EDA+ARGL+RGDEVL+++ RGE++ RVET
Sbjct: 718 RVLEHWHTGSMTARVPELYRAYPDAQIFMHPEDAKARGLQRGDEVLVASPRGEIKTRVET 777

Query: 780 RGRNKPPKGLVFVPFFDARILVNKLILDATDPLSKQTDFKKCPVKITK 827
           +GRNKPP+G+VF+PFFDAR LVNKLILDATDPLSK+TDFKKCPVK+ K
Sbjct: 778 KGRNKPPRGVVFMPFFDARQLVNKLILDATDPLSKETDFKKCPVKVMK 825