Pairwise Alignments

Query, 829 a.a., periplasmic nitrate reductase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1004 a.a., selenium-containing formate dehydrogenase, nitrate inducible, alpha subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  120 bits (302), Expect = 3e-31
 Identities = 214/960 (22%), Positives = 350/960 (36%), Gaps = 191/960 (19%)

Query: 3   MTRRAFVK---ANAAASAAAVAGITLPASATNLIASSDQTAIHWDKAPCRFCGTGCSVLV 59
           M RR F K   A AA SA +  G+ +   A   +           +  C +C  GC +L+
Sbjct: 1   MNRRQFFKLCAAGAATSAISALGL-MSEKAYAAVREFKLLGAKETRNNCPYCSVGCGLLM 59

Query: 60  GTQ-------DGRVVATQGDPEAPVNKGLNCIKGYFLSKIMYGQDRLKTPLLRMKDGQYH 112
            +Q       +  +   +GD + PVN+G  C KG  L   +    RL+ P  R       
Sbjct: 60  YSQGSGGKNSEHAIFHIEGDADHPVNRGALCSKGAGLVDYVNSPHRLQYPEYRAPGSN-- 117

Query: 113 KDGEFTPVSWDTAFDVMAEKWK----ASLKTKGPTSV--------GMFGSGQWTVMEGYA 160
              ++  +SW  AF  +A   K    A+L  K    V        GM  S       G A
Sbjct: 118 ---KWERISWQDAFKRIARLMKDDRDANLIEKNADGVTVNRWLTTGMMTSSGMANESGLA 174

Query: 161 AVKLMKAGFRSNNIDPNARHCMASAVVGFMRTFGIDEPMGCYDDFEHADAFVLWGSNMAE 220
             K  +A      ID  AR+  +  V     TFG       + D ++++  ++ G N AE
Sbjct: 175 TQKFARA-LGLVAIDTIARNUHSPTVASLAPTFGRGAMTNHWIDIKNSNVVIIMGGNAAE 233

Query: 221 MHPVLWTRITDRRLSHPHVKVNVLSTYYHRSFELADHGYIFHPQSDLAIANFIANYIIQN 280
            HPV +  +T+  + H + K+ V+   ++RS  LADH       +D+A    +  Y+I  
Sbjct: 234 AHPVGFGWVTEA-MQHNNAKLIVVDPRFNRSASLADHYAPIRSGTDIAFLLGVIRYLIST 292

Query: 281 DAVNWDFVNKHTHFKQAVT---DIGYGLRDDHPLQKKAKNANSG---------DVSDISF 328
           + VN+D+V  +T+    V    D   GL       K   N  S           + D + 
Sbjct: 293 NQVNFDYVKAYTNASYLVRDDFDFHDGLFSGFDEAKGEYNKESWFYQLDEDGYAIVDETL 352

Query: 329 EE-------YKKSVAPYTVEKASEISGVSPDKLITLAKQYADPNTK---VMSLWTMGMNQ 378
           E         K+ V  Y     S I+G   +    +    A  +TK      ++ +G   
Sbjct: 353 EHPRCVWNLLKQHVERYDFATVSNITGTPTEDYQVVCDAIASTHTKDRVATFMYALGWTH 412

Query: 379 HTRGVWMQSLVYNLHLLTGKIATPGNSPFSLTGQPSACGTAREVGTFAHRLPADMVVANP 438
           H++G      +  + LL G I   G    +L G  +  G+  ++G  A  LP  + + N 
Sbjct: 413 HSKGAQNIRSMAMIQLLLGNIGQLGGGVNALRGHANVQGST-DMGLLAQSLPGYLKLPND 471

Query: 439 KHRAIAEKV---------------WK-------------LPEGTIPEKP-GFHAVQQ--- 466
           K   +A  +               W+               E   PE   G+  + +   
Sbjct: 472 KEPTLAAHLAANTPKPLRPGQTNYWQNYPKFYVSLLKAFWGENATPENEFGYQWLPKWDQ 531

Query: 467 --------DRMLKDGVLNCYWVQCNNNMQAGPNINEERLPGYRNPENFIVVSDAYPTVTA 518
                   D M +  V  C  VQ  N + + PN N + +    N + F+VV D   + TA
Sbjct: 532 MYDFGKHLDMMYRGKVNGCI-VQGVNAINSMPNRN-KNIKALSNLK-FLVVLDNLSSETA 588

Query: 519 -----------------QAADLVLPTAMWVEKEGAYGNAERRTQVWYQQVKTVGESHSDS 561
                            Q     LP  ++ E+EG+  N+ R  Q  Y+     GE+ SDS
Sbjct: 589 TFWQNEPGFNEVDTASIQTEVFRLPATVFAEEEGSIVNSGRWMQWHYKWANPPGEAMSDS 648

Query: 562 WQV----IEFSKRFKVE-DVWPEELLAKAPQYRGKTLYDVLFKNGQVDKFPLSEARELN- 615
             V    +E  K ++ E    PE + A    Y        +    +++ + ++  R+++ 
Sbjct: 649 EIVSGLLLELRKLYREEGGKLPEPIQAINWNYTDPHNPSSIELTKELNGYDVATKRQISS 708

Query: 616 ------DDAHHFGFYIQKGLFEEYA-EFGRGHGHD---------------LAPYDVYHQ- 652
                 D +     ++  G + E   +  R   HD               L    +Y++ 
Sbjct: 709 FAELKADGSTASACWVYAGSWTEAGNQMARRDNHDPSGKGITPGWAFAWPLNRRVLYNRA 768

Query: 653 ---VRGLRW----PVVDGKETKWRFKEGSDPYAKAG---SGWDFYGKPDGKAWI------ 696
              V G  W     +V+ K+ KW   +  D  AK     S   F  + DG          
Sbjct: 769 SCDVNGKPWDEHRKIVEWKDGKWEGIDVPDFNAKLNPQESAHPFIMQADGVGRFFALKLL 828

Query: 697 -----------ISSPYEAPPEMPN--------------------EEYDLWLCTGRVLEHW 725
                      + SP    P  PN                    EEY     T  + EH+
Sbjct: 829 KEGPFPEHYEPVESPIGTNPLHPNVVHSPVLRWFEGVKDTIGTKEEYPYACTTYSLTEHF 888

Query: 726 HTGTMTRRVPELYKAVPDALCFMHHEDAQARGLRRGDEVLISNSRGEVRVRVETRGRNKP 785
           +  T   R+  +  A+P+    M+ + A  +G++ GD V +S+ RG +  +     R +P
Sbjct: 889 NFWTTHCRLAAI--AMPETFVEMNEQLAAEKGIKNGDWVKVSSKRGHILTKALVTKRMRP 946