Pairwise Alignments

Query, 829 a.a., periplasmic nitrate reductase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1005 a.a., formate dehydrogenase, alpha subunit, selenocysteine-containing (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  115 bits (288), Expect = 1e-29
 Identities = 123/483 (25%), Positives = 200/483 (41%), Gaps = 58/483 (12%)

Query: 1   MKMTRRAFVKANA-AASAAAVAGITLPASATNLIASSDQTAIHWDKAP---CRFCGTGCS 56
           M +TRR F+K +A AA A A  G+ L  + T  +A ++   + W K     C +C  GC 
Sbjct: 1   MTVTRRHFLKLSAGAAVAGAFTGLGLSLAPT--VARAELQKLQWAKQTTSICCYCAVGCG 58

Query: 57  VLVGTQ---DGRVVATQGDPEAPVNKGLNCIKGYFLSKIMYGQDRLKTPLLRMKDGQYHK 113
           ++V T     GR V  +GDP+ P+N+G  C KG  + ++     R   PL R       K
Sbjct: 59  LIVHTAKDGQGRAVNVEGDPDHPINEGSLCPKGASIFQLGENDQRGTQPLYRAPFSDTWK 118

Query: 114 DGEFTPVSWDTAFDVMAEKWK----ASLKTKGPT--------SVGMFGSGQWTVMEGYAA 161
                PV+WD A   +A++ K    AS   K           ++  FGS      E +A 
Sbjct: 119 -----PVTWDFALTEIAKRIKKTRDASFTEKNAAGDLVNRTEAIASFGSAAMDNEECWAY 173

Query: 162 VKLMKAGFRSNNIDPNARHCMASAVVGFMRTFGIDEPMGCYDDFEHADAFVLWGSNMAEM 221
             ++++      I+  AR   +  V     +FG       ++D  ++D  ++ GSN AE 
Sbjct: 174 GNILRS-LGLVYIEHQARIUHSPTVPALAESFGRGAMTNHWNDLANSDCILIMGSNAAEN 232

Query: 222 HPVLWT---RITDRRLSHPHVKVNVLSTYYHRSFELADHGYIFHPQSDLAIANFIANYII 278
           HP+ +    R  D+  +  HV        + R+    D        +D+     +  YI+
Sbjct: 233 HPIAFKWVLRAKDKGATLIHVDPR-----FTRTSARCDVYAPIRSGADIPFLGGLIKYIL 287

Query: 279 QNDAVNWDFVNKHTHFKQAVTD---------IGYGLRD---DHPLQKKAKNANSGDVSDI 326
            N     D+V ++T+    V +          GY   +   D  +     +AN     D 
Sbjct: 288 DNKLYFTDYVREYTNASLIVGEKFSFKDGLFSGYDAANKKYDKSMWAFELDANGVPKRDP 347

Query: 327 SFEE-------YKKSVAPYTVEKASEISGVSPDKLITLAKQYA---DPNTKVMSLWTMGM 376
           + +         KK    Y ++K + I+G S ++L  + K YA    P+     ++ MG 
Sbjct: 348 ALKHPRCVINLLKKHYERYNLDKVAAITGTSKEQLQQVYKAYAATGKPDKAGTIMYAMGW 407

Query: 377 NQHTRGVWMQSLVYNLHLLTGKIATPGNSPFSLTGQPSACGTAREVGTFAHRLPADMVVA 436
            QH+ GV     +  + LL G I   G    +L G+ +  G+  + G  AH  P    V 
Sbjct: 408 TQHSVGVQNIRAMAMIQLLLGNIGVAGGGVNALRGESNVQGST-DQGLLAHIWPGYNPVP 466

Query: 437 NPK 439
           N K
Sbjct: 467 NSK 469



 Score = 52.8 bits (125), Expect = 1e-10
 Identities = 29/70 (41%), Positives = 37/70 (52%)

Query: 718 TGRVLEHWHTGTMTRRVPELYKAVPDALCFMHHEDAQARGLRRGDEVLISNSRGEVRVRV 777
           T RV EHW TG MTRR   L +A P   C +  E A+ RG+  GD V +S+ RG +    
Sbjct: 882 TYRVTEHWQTGLMTRRCAWLVEAEPQIFCEISKELAKLRGIGNGDTVKVSSLRGALEAVA 941

Query: 778 ETRGRNKPPK 787
               R +P K
Sbjct: 942 IVTERIRPFK 951



 Score = 28.1 bits (61), Expect = 0.003
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 525 LPTAMWVEKEGAYGNAERRTQVWYQQVKTVGESHSDSWQVIEFSKRFKVEDVWPEE 580
           LP  + +EKEG+  N+ R  Q  Y+  K   E+  D   +++  K  KV +++ +E
Sbjct: 606 LPCCVSIEKEGSVANSGRWMQWRYRGPKPYAETKPDGDIMLDMFK--KVRELYAKE 659