Pairwise Alignments

Query, 829 a.a., periplasmic nitrate reductase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 950 a.a., formate dehydrogenase alpha subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  115 bits (288), Expect = 1e-29
 Identities = 134/587 (22%), Positives = 236/587 (40%), Gaps = 76/587 (12%)

Query: 3   MTRRAFVKANAAASAAAVAGITLPASATNLIASSD---QTAIHWDKAPCRFCGTGCSVLV 59
           ++RR F+K     +    A   +         + D      I   +  C  C  GC +  
Sbjct: 20  ISRRQFMKQAGITTGGIAAASLMGTGMMRRAEAKDVPHDAPIEVKRTICSACAVGCGLYA 79

Query: 60  GTQDGRVVATQGDPEAPVNKGLNCIKGYFLSKIMYGQDRLKTPLLRMKDGQYHKDGEFTP 119
             Q+G     +   + P N G +C KG  L +  +G+ RLK P+ ++ DG++ K      
Sbjct: 80  EVQNGVWTGQEPAFDHPFNAGGHCAKGAALREHGHGEKRLKYPM-KLVDGKWKK------ 132

Query: 120 VSWDTAFDVMAEKWKASLKTKGPTSVGMFGSGQWTVMEGYAAVKLMKAGFRSNNIDPNAR 179
           +SW+ A + + ++     K  GP SV   GS +++  EG    + + A + +NN+D +AR
Sbjct: 133 ISWEDAINEVGDQMLNIRKESGPDSVYFMGSAKFS-NEGCYMYRKLAAMWGTNNVDHSAR 191

Query: 180 HCMASAVVGFMRTFGIDEPMGCYDDFEHADAFVLWGSNMAEMHPVLWTRITDRRLSHPHV 239
            C ++ V G   T+G       ++D ++A+A  L G+N AE HPV    I   +  + + 
Sbjct: 192 ICHSTTVAGVANTWGYGAQTNSFNDIQNANAIFLIGANPAEAHPVSMQHILIAKEKN-NA 250

Query: 240 KVNVLSTYYHRSFELADHGYIFHPQSDLAIANFIANYIIQNDAVNWDFVNKHTHFKQAVT 299
           K+ V+   + R+   +D      P +D+     +  +I +N    W+     T  +Q V 
Sbjct: 251 KIIVVDPRFSRTAAHSDLHCAIRPGTDIPFIYGMLWHIFEN---GWE---DKTFIQQRVF 304

Query: 300 DIGYGLRDDHPLQKKAKNANSGDVSDISFEEYKKSVAPYTVEKASEISGVSPDKLITLAK 359
           ++                           E  ++ V  +  ++ ++I+GVS + +   AK
Sbjct: 305 EM---------------------------ETIREEVKKFPPKEVADITGVSEEVVYQAAK 337

Query: 360 QYADPNTKVMSLWTMGMNQHTRGVWMQSLVYNLHLLTGKIATPGNSPFSLTGQPSACGTA 419
             A+ N     +W MG  QH  G         L L  G +   G       G  +  G A
Sbjct: 338 LMAE-NRPGTVIWCMGGTQHHVGNANTRAYCILQLALGNMGVSGGGTNIFRGHDNVQG-A 395

Query: 420 REVGTFAHRLPA--DMVVANPKHRAIAEKVWKLPEGTIPEKPGFHA-VQQDRMLKDGVLN 476
            ++G     LP    +  A   H      VW L    +  +   +A + +D M   G+  
Sbjct: 396 TDLGLLFDNLPGYYGLTSAAWTHWT---HVWDLDMEWVKSRFDQNAYLGKDPMTTPGIPC 452

Query: 477 CYW-----------VQCNNNMQA---GPNINEE----RLPGYRNPENFIVVSDAYPTVTA 518
             W            Q +N   A   G ++N E     +    +  + +VV D +PT+  
Sbjct: 453 SRWHDGVLEDKSKLAQKDNIRMAFFWGQSVNTETRQREVRDALDKMDTVVVVDPFPTMAG 512

Query: 519 -----QAADLVLPTAMWVEKEGAYGNAERRTQVWYQQVKTVGESHSD 560
                +    +LP A   E +G+  N+ R  Q   Q ++ + ES +D
Sbjct: 513 VMHRRKNGVYLLPAATQFETQGSVSNSGRSIQWREQVIQPLFESKTD 559



 Score = 38.9 bits (89), Expect = 1e-06
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 711 EYDLWLCTGRVLEHWHTGTMTRRVPELYKAVPDALCFMHHEDAQARGLRRGDEVLISNSR 770
           +Y L L +GR++E+   G  +R  P L +   +    ++  DA  RG+R G+ V +  + 
Sbjct: 813 KYPLVLTSGRLVEYEGGGEESRSNPWLAELQQEMFVEINPGDAADRGIRNGEFVWLEGAE 872

Query: 771 -GEVRVRVETRGRNKPPKGLVFVPFFDARIL 800
            G ++V+     R KP  G+ F+P+  A ++
Sbjct: 873 GGRIKVQALVTPRVKP--GVTFMPYHFAGVM 901