Pairwise Alignments

Query, 829 a.a., periplasmic nitrate reductase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 950 a.a., formate dehydrogenase alpha subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  118 bits (295), Expect = 2e-30
 Identities = 140/606 (23%), Positives = 240/606 (39%), Gaps = 86/606 (14%)

Query: 3   MTRRAFVKANAAASAAAVA------GITLPASATNLIASSDQTAIHWDKAPCRFCGTGCS 56
           + RR F+K+   A+    A      G+   A A   I  +  T +   +  C  C  GC 
Sbjct: 20  LNRRQFLKSAGLATGGIAAASMLGTGMMRKAQAQEHIPHNAPTEVK--RTICSHCAVGCG 77

Query: 57  VLVGTQDGRVVATQGDPEAPVNKGLNCIKGYFLSKIMYGQDRLKTPLLRMKDGQYHKDGE 116
           +    Q+G     +   + P N+G +C KG  L +  +G+ RLK P+ +++ G++ K   
Sbjct: 78  IYAEVQNGVWTGQEPAFDHPFNQGGHCAKGAALREHGHGEKRLKYPM-KLEGGKWKK--- 133

Query: 117 FTPVSWDTAFDVMAEKWKASLKTKGPTSVGMFGSGQWTVMEGYAAVKLMKAGFRSNNIDP 176
              +SW+ A + + +K  A  +  GP S+   GS +++  + Y   KL  A + +NN+D 
Sbjct: 134 ---ISWEQAINEVGDKMTAIRQESGPDSIYFMGSAKFSNEQAYLYRKLA-ALWGTNNVDH 189

Query: 177 NARHCMASAVVGFMRTFGIDEPMGCYDDFEHADAFVLWGSNMAEMHPVLWTRITDRRLSH 236
           +AR C ++ V G   T+G        +D  ++   +  GSN +E HPV    I   +   
Sbjct: 190 SARICHSTTVAGVANTWGYGAQTNSLNDIRNSKCIMFVGSNPSEAHPVAMQHILVAK--E 247

Query: 237 PHVKVNVLSTYYHRSFELADHGYIFHPQSDLAIANFIANYIIQNDAVNWDFVNKHTHFKQ 296
              K+ V+   + R+   +D      P +D+     +  +I +N   + +F+N+      
Sbjct: 248 RGAKIIVVDPRFTRTAAKSDEYVHIRPGTDIPFIYGLLWHIFENGWEDKEFINQRV---- 303

Query: 297 AVTDIGYGLRDDHPLQKKAKNANSGDVSDISFEEYKKSVAPYTVEKASEISGVSPDKLIT 356
                 YG+                       E  +  V  YT E+   ++GV   ++  
Sbjct: 304 ------YGM-----------------------ERIRDEVKKYTPEEVENVAGVPKAQMYR 334

Query: 357 LAKQYADPNTKVMSLWTMGMNQHTRGVWMQSLVYNLHLLTGKIATPGNSPFSLTGQPSAC 416
           +AK  A+     + +W MG  QH  G         L L  G +   G       G  +  
Sbjct: 335 IAKMLAETKPGTI-VWCMGGTQHHVGNANTRSYCILQLALGNMGVSGGGTNIFRGHDNVQ 393

Query: 417 GTAREVGTFAHRLP-------------ADMVVANPKHRA----IAEKVWKLPEGT--IPE 457
           G A + G     LP             + +   +PK  A      E + + P+ +  IP 
Sbjct: 394 G-ATDFGLLFDNLPGYYGLTSGAWAHWSGVWDLDPKWVAGRFDQGEYLGQTPQTSTGIPC 452

Query: 458 KPGFHAVQQDR---MLKDGV-LNCYWVQCNNNMQAGPNINEERLPGYRNPENFIVVSDAY 513
                 V +D+     KD + L  +W Q  N    G  + E       N  + +VV D  
Sbjct: 453 SRWHDGVLEDKTKIAQKDNIRLAFFWGQSVNTETRGREVREA-----LNKLDTVVVVDPI 507

Query: 514 PT---VTAQAAD--LVLPTAMWVEKEGAYGNAERRTQVWYQQVKTVGESHSDSWQVIEFS 568
           PT   V  Q  D   +LP A   E  G+     R  Q   + ++ + ES  D   + + +
Sbjct: 508 PTMAGVMHQRKDGVYLLPAATQFETYGSVSATNRSIQWRSKVIEPLFESLPDHVIMYKLA 567

Query: 569 KRFKVE 574
           K+  +E
Sbjct: 568 KKLGIE 573



 Score = 37.0 bits (84), Expect = 5e-06
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 712 YDLWLCTGRVLEHWHTGTMTRRVPELYKAVPDALCFMHHEDAQARGLRRGDEVLISNSRG 771
           + L L +GR++E+   G  +R  P L +   +    M+  DA  RG+R GD V + +  G
Sbjct: 814 FPLTLTSGRLVEYEGGGEESRSNPWLAELQQEMFIEMNPADAADRGIRDGDNVFVHSPEG 873

Query: 772 EVRVRVETRGRNKPPKGLVFVPFFDARI 799
             ++ V+     +   G  F+P+  A I
Sbjct: 874 -AKITVKAMVTPRVVPGECFMPYHFAGI 900