Pairwise Alignments

Query, 168 a.a., ferredoxin-type protein NapF from Vibrio cholerae E7946 ATCC 55056

Subject, 395 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

 Score = 62.8 bits (151), Expect = 7e-15
 Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 9/130 (6%)

Query: 33  PDAFTDECTRCGKCVTACETHIIEKGDGGFPTVNFSIDECTFCYQCAQSCPEPLFVAQSE 92
           P A T +C  CG CV  C    I   D          D+C +C  C+Q+CP        +
Sbjct: 125 PIAVTKDCVACGVCVPECPVDAISIED----IAVIDTDKCIYCTVCSQTCPWNAIFVAGK 180

Query: 93  APWQAKVHITHHCLAQQQ-VECRSCQDACPEEAIHFALQIGRTASPQVNSEQCSGCGACV 151
            P + +  I    + +++ + C  C +ACP   I +  +      P    E C  CG CV
Sbjct: 181 LPQKRQKTIKSFTVNEEECIGCEKCVEACPGSMIEYNGEKLGVKLP----EACPACGLCV 236

Query: 152 SVCPSNAMTV 161
             CP   +++
Sbjct: 237 ESCPVEVISL 246



 Score = 52.8 bits (125), Expect = 7e-12
 Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 26/132 (19%)

Query: 40  CTRCGKCVTACETHIIEKGDGGFPTVNFSIDECTFCYQCAQSCPEPLFVAQSEAPWQAKV 99
           C +C  C TAC T  + + DG    + F+  +C     C ++CP  +       P+    
Sbjct: 34  CIQCFSCATACPTGALVEKDG---KLVFNGSKCDLDGACQKACPVGIKKVDDRFPYSKG- 89

Query: 100 HITHHCLAQQQVECRSCQDACPEEAIHFALQIGRTASPQVN----------SEQCSGCGA 149
               HC     V C  C + CP E I      G+   P+            ++ C  CG 
Sbjct: 90  ----HC-----VLCEKCVEICPAEIISLP---GKAEKPKKEIIIPQEPIAVTKDCVACGV 137

Query: 150 CVSVCPSNAMTV 161
           CV  CP +A+++
Sbjct: 138 CVPECPVDAISI 149



 Score = 50.4 bits (119), Expect = 3e-11
 Identities = 38/139 (27%), Positives = 55/139 (39%), Gaps = 15/139 (10%)

Query: 38  DECTRCGKCVTACETHIIEKGDGGFPTVNFSIDE-CTFCYQCAQSCPEPLFVAQSEAPWQ 96
           +EC  C KCV AC   +IE        +   + E C  C  C +SCP  + V   E  + 
Sbjct: 197 EECIGCEKCVEACPGSMIEYNG---EKLGVKLPEACPACGLCVESCP--VEVISLEVEYA 251

Query: 97  AKVHITHHCLAQQQVECRSCQDA---CPEEAIHFALQIGRTASPQVNSEQ------CSGC 147
           +   +T   L   + +C  C      CP  AI      G     +  +E+      C  C
Sbjct: 252 SAKPVTDEGLVWSEEKCAYCGPCAIKCPTGAIKVVNPKGLELPSKKKTEKANEFAMCIRC 311

Query: 148 GACVSVCPSNAMTVHYTQH 166
           GAC   CP+ A+ +    H
Sbjct: 312 GACAMKCPTGALKMGKMVH 330



 Score = 49.7 bits (117), Expect = 6e-11
 Identities = 39/155 (25%), Positives = 56/155 (36%), Gaps = 40/155 (25%)

Query: 39  ECTRCGKCVTACETHIIEKGDGGFPTVNFSIDECTFCYQCAQSCPEPLFVAQSEAPWQAK 98
           +C   G C  AC   I +K D  FP   +S   C  C +C + CP  +     +A    K
Sbjct: 62  KCDLDGACQKACPVGI-KKVDDRFP---YSKGHCVLCEKCVEICPAEIISLPGKAEKPKK 117

Query: 99  --------VHITHHCLA-----------------------QQQVECRSCQDACPEEAIHF 127
                   + +T  C+A                        + + C  C   CP  AI  
Sbjct: 118 EIIIPQEPIAVTKDCVACGVCVPECPVDAISIEDIAVIDTDKCIYCTVCSQTCPWNAIFV 177

Query: 128 ALQIGRTA-----SPQVNSEQCSGCGACVSVCPSN 157
           A ++ +       S  VN E+C GC  CV  CP +
Sbjct: 178 AGKLPQKRQKTIKSFTVNEEECIGCEKCVEACPGS 212



 Score = 47.4 bits (111), Expect = 3e-10
 Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 16/136 (11%)

Query: 38  DECTRCGKCVTACETHIIE---KGDGGFPTVN----FSIDECTFCYQCAQSCPEPLFVAQ 90
           + C  CG CV +C   +I    +     P  +    +S ++C +C  CA  CP       
Sbjct: 227 EACPACGLCVESCPVEVISLEVEYASAKPVTDEGLVWSEEKCAYCGPCAIKCPTGAIKVV 286

Query: 91  S----EAPWQAKVHITHHCLAQQQVECRSCQDACPEEAIHFALQIGRT---ASPQVNSEQ 143
           +    E P + K    +       + C +C   CP  A+     +      A  + +   
Sbjct: 287 NPKGLELPSKKKTEKANEFA--MCIRCGACAMKCPTGALKMGKMVHEGKEYARVEFSPAL 344

Query: 144 CSGCGACVSVCPSNAM 159
           C+ CG CV VCP   +
Sbjct: 345 CNECGECVDVCPQKTL 360



 Score = 38.1 bits (87), Expect = 2e-07
 Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 20/91 (21%)

Query: 65  VNFSIDECTFCYQCAQSCPEPLFVAQSEAPWQAKVHITHHCLAQQQVECRSCQDACPEEA 124
           ++   D C  C  CA++CP     A   AP++        C     ++C SC  ACP  A
Sbjct: 4   ISIQEDACLVCNACAKACPTE---AIEIAPFKT-------C-----IQCFSCATACPTGA 48

Query: 125 IHFALQIGRTASPQVNSEQCSGCGACVSVCP 155
           +     + +      N  +C   GAC   CP
Sbjct: 49  L-----VEKDGKLVFNGSKCDLDGACQKACP 74



 Score = 33.5 bits (75), Expect = 4e-06
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%)

Query: 40  CTRCGKCVTACETHIIE-KGDGGFPTVNFSIDECTFCYQCAQSC 82
           C  CG+CV  C    +E  GD   P   +    C  C +C ++C
Sbjct: 345 CNECGECVDVCPQKTLELTGDDKMPLKGY----CVMCLKCIEAC 384



 Score = 32.3 bits (72), Expect = 1e-05
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 11/47 (23%)

Query: 113 CRSCQDACPEEAIHFALQIGRTASPQVNSEQCSGCGACVSVCPSNAM 159
           C +C  ACP EAI  A             + C  C +C + CP+ A+
Sbjct: 14  CNACAKACPTEAIEIA-----------PFKTCIQCFSCATACPTGAL 49



 Score = 25.8 bits (55), Expect = 0.001
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 135 ASPQVNSEQCSGCGACVSVCPSNAMTV 161
           A   +  + C  C AC   CP+ A+ +
Sbjct: 2   AGISIQEDACLVCNACAKACPTEAIEI 28