Pairwise Alignments

Query, 168 a.a., ferredoxin-type protein NapF from Vibrio cholerae E7946 ATCC 55056

Subject, 161 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

 Score = 48.1 bits (113), Expect = 7e-11
 Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 17/129 (13%)

Query: 40  CTRCGKCVTACETHIIEKGDGGFPTVNFSIDECTFCYQCAQSCP-EPLFVAQSEAPWQAK 98
           C  C +C+  C    I      FP V    ++C +C  C ++CP + + + ++    +  
Sbjct: 38  CILCNRCLEVCPVTAISSN---FPEVPDIDNKCVYCNTCVETCPVDAIKITKTRVRVENG 94

Query: 99  VHITHHCLAQQQVE--------CRSCQDACPEEAIHFALQIGRTASPQVNSEQCSGCGAC 150
             I  + L  ++++        C  C   CP EAI    +   T S   N ++C  CG C
Sbjct: 95  NLIIENRLKSKKLDYNRKKCVMCLVCTKNCPFEAIS---ESDDTIS--FNMDKCVLCGHC 149

Query: 151 VSVCPSNAM 159
             +CP+ A+
Sbjct: 150 EEICPAKAI 158



 Score = 36.2 bits (82), Expect = 3e-07
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 39  ECTRCGKCVTACETHIIEKGDGGFPTVNFSIDECTFCYQCAQSCP 83
           +C  C  C   C    I + D    T++F++D+C  C  C + CP
Sbjct: 113 KCVMCLVCTKNCPFEAISESDD---TISFNMDKCVLCGHCEEICP 154



 Score = 32.3 bits (72), Expect = 4e-06
 Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 22/102 (21%)

Query: 72  CTFCYQCAQSCPEPLFVAQSEAPWQAKVHITHHCLAQQQVECRSCQDACPEEAIHFALQI 131
           C  C +C + CP    V    + +     I + C     V C +C + CP +AI      
Sbjct: 38  CILCNRCLEVCP----VTAISSNFPEVPDIDNKC-----VYCNTCVETCPVDAIKITKTR 88

Query: 132 GRTASPQV-------------NSEQCSGCGACVSVCPSNAMT 160
            R  +  +             N ++C  C  C   CP  A++
Sbjct: 89  VRVENGNLIIENRLKSKKLDYNRKKCVMCLVCTKNCPFEAIS 130



 Score = 31.6 bits (70), Expect = 7e-06
 Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 24/103 (23%)

Query: 38  DECTRCGKCVTACETHIIE------KGDGG---------FPTVNFSIDECTFCYQCAQSC 82
           ++C  C  CV  C    I+      + + G            ++++  +C  C  C ++C
Sbjct: 65  NKCVYCNTCVETCPVDAIKITKTRVRVENGNLIIENRLKSKKLDYNRKKCVMCLVCTKNC 124

Query: 83  PEPLFVAQSEAPWQAKVHITHHCLAQQQVECRSCQDACPEEAI 125
           P   F A SE+      ++       + V C  C++ CP +AI
Sbjct: 125 P---FEAISESDDTISFNM------DKCVLCGHCEEICPAKAI 158



 Score = 29.6 bits (65), Expect = 3e-05
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 113 CRSCQDACPEEAIHFALQIGRTASPQVNSEQCSGCGACVSVCPSNAMTVHYTQ 165
           C  C + CP  AI           P ++++ C  C  CV  CP +A+ +  T+
Sbjct: 41  CNRCLEVCPVTAISSNFP----EVPDIDNK-CVYCNTCVETCPVDAIKITKTR 88



 Score = 27.7 bits (60), Expect = 1e-04
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 138 QVNSEQCSGCGACVSVCPSNAMTVHYTQ 165
           ++N E C  C  C+ VCP  A++ ++ +
Sbjct: 32  EINPEICILCNRCLEVCPVTAISSNFPE 59



 Score = 21.6 bits (44), Expect = 0.007
 Identities = 7/19 (36%), Positives = 9/19 (47%)

Query: 38  DECTRCGKCVTACETHIIE 56
           D+C  CG C   C    I+
Sbjct: 141 DKCVLCGHCEEICPAKAIK 159