Pairwise Alignments

Query, 168 a.a., ferredoxin-type protein NapF from Vibrio cholerae E7946 ATCC 55056

Subject, 352 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score = 55.8 bits (133), Expect = 7e-13
 Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 20/140 (14%)

Query: 38  DECTRCGKCVTACETHIIE--KGDGGFPTVN------FSIDECTFCYQCAQSCPEPLFVA 89
           D+C  CG C   C    IE    D    ++N        +D C +C  C ++CP     A
Sbjct: 152 DDCVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDLDACVYCKVCEKACPHNAIEA 211

Query: 90  QS-EAPWQAKV---HITHHCLAQQQVE------CRSCQDACPEEAIHFALQIGRTASPQV 139
              + P  +K+    +      Q  ++      C  C + CP +AI             +
Sbjct: 212 ICYKCPLASKIKKPELYGEIKGQTNIDKDLCVSCGWCANICPADAIEVEKPF--EGELII 269

Query: 140 NSEQCSGCGACVSVCPSNAM 159
           +   C+ CGAC+SVCP NA+
Sbjct: 270 DEPACNACGACISVCPCNAL 289



 Score = 54.3 bits (129), Expect = 2e-12
 Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 19/142 (13%)

Query: 37  TDECTRCGKCVTACETHIIEKGDGGFPT------------VNFSIDECTFCYQCAQSCPE 84
           +++C  CG C  AC    ++      P             +  +  +C  C QC   CP+
Sbjct: 68  SEKCVLCGMCACACPFDAVKLSINDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCPQ 127

Query: 85  PLFVAQSEAPWQAKVHITHHCLAQQQ-VECRSCQDACPEEAIHF------ALQIGRTASP 137
                + E P +  + +    + +   V C  C + CP +AI        AL +   A  
Sbjct: 128 CAIDVEREVPERKSLVLGEITIKKDDCVLCGICAEYCPADAIELIPNDMNALSLNPIADI 187

Query: 138 QVNSEQCSGCGACVSVCPSNAM 159
           +++ + C  C  C   CP NA+
Sbjct: 188 KIDLDACVYCKVCEKACPHNAI 209



 Score = 53.1 bits (126), Expect = 5e-12
 Identities = 38/143 (26%), Positives = 57/143 (39%), Gaps = 28/143 (19%)

Query: 40  CTRCGKCVTACETHIIE--------KGDGGFPTVNFSIDECTFCYQCAQSCP-------- 83
           C  CG C   C T  IE        KGD   P ++ S ++C  C  CA +CP        
Sbjct: 32  CVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDIS-EKCVLCGMCACACPFDAVKLSI 90

Query: 84  --EPLFVAQSEAPWQAKVHITHHCLAQQQVECRSCQDACPEEAIHFALQIGRTAS----- 136
             +P+    +E P   K+         + V C  C+  CP+ AI    ++    S     
Sbjct: 91  NDKPI----TEMPQYPKIKRGIELNQSKCVLCEQCELVCPQCAIDVEREVPERKSLVLGE 146

Query: 137 PQVNSEQCSGCGACVSVCPSNAM 159
             +  + C  CG C   CP++A+
Sbjct: 147 ITIKKDDCVLCGICAEYCPADAI 169



 Score = 49.7 bits (117), Expect = 5e-11
 Identities = 42/148 (28%), Positives = 56/148 (37%), Gaps = 27/148 (18%)

Query: 38  DECTRCGKCVTACETHIIEKGDGGFPTV----------------NFSIDECTFCYQCAQS 81
           D C  C  C  AC  + IE      P                  N   D C  C  CA  
Sbjct: 192 DACVYCKVCEKACPHNAIEAICYKCPLASKIKKPELYGEIKGQTNIDKDLCVSCGWCANI 251

Query: 82  CPEPLFVAQSEAPWQAKVHITHH-CLAQQQVECRSCQDACPEEAIHFAL---QIGRTASP 137
           CP      + E P++ ++ I    C A     C +C   CP  A+ F     Q  +  + 
Sbjct: 252 CPADAI--EVEKPFEGELIIDEPACNA-----CGACISVCPCNALVFPQPEKQGDKVPNV 304

Query: 138 QVNSEQCSGCGACVSVCPSNAMTVHYTQ 165
            VN + C  CGAC   CP +A+TV  T+
Sbjct: 305 VVNQDVCILCGACTHSCPVDALTVKRTK 332



 Score = 43.1 bits (100), Expect = 5e-09
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 24/139 (17%)

Query: 43  CGKCVTACETHIIEKGDGGFPTVNFSIDECTFCYQCAQSCPEPLFVAQSEAPWQAKVHIT 102
           C +C    E  + E+       +    D+C  C  CA+ CP        E        ++
Sbjct: 125 CPQCAIDVEREVPERKSLVLGEITIKKDDCVLCGICAEYCPADAI----ELIPNDMNALS 180

Query: 103 HHCLAQQQVE------CRSCQDACPEEAIH-------FALQIGR-------TASPQVNSE 142
            + +A  +++      C+ C+ ACP  AI         A +I +            ++ +
Sbjct: 181 LNPIADIKIDLDACVYCKVCEKACPHNAIEAICYKCPLASKIKKPELYGEIKGQTNIDKD 240

Query: 143 QCSGCGACVSVCPSNAMTV 161
            C  CG C ++CP++A+ V
Sbjct: 241 LCVSCGWCANICPADAIEV 259