Pairwise Alignments

Query, 168 a.a., ferredoxin-type protein NapF from Vibrio cholerae E7946 ATCC 55056

Subject, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score = 52.0 bits (123), Expect = 1e-11
 Identities = 38/159 (23%), Positives = 57/159 (35%), Gaps = 49/159 (30%)

Query: 40  CTRCGKCVTACETHIIEKGD---------GGFPTV-NFSIDE--CTFCYQCAQSCPEPLF 87
           C  CG CV +C T+++E G             P + N  IDE  C  C  C  +CP    
Sbjct: 84  CINCGNCVESCPTNVLEMGTLRKEAKELLWNVPKIINLLIDEEICVSCGTCENACPVDAI 143

Query: 88  VAQSEAPWQAKVHITHHCLAQQQVECRSCQDACP---------EEAIHFALQIGRTAS-- 136
              +   ++  V+I         V C++C   CP         E  +   ++I +     
Sbjct: 144 SHNNTGLYEIDVNIC--------VSCKNCLKVCPVENAIVTYDEPGLSEKIEIAQNTKFD 195

Query: 137 ------------------PQVNSEQCSGCGACVSVCPSN 157
                             P++    C GCG CV VCP +
Sbjct: 196 RERLGSDFKEESDVIAEIPRIVPSLCIGCGNCVDVCPGS 234



 Score = 47.8 bits (112), Expect = 2e-10
 Identities = 35/139 (25%), Positives = 51/139 (36%), Gaps = 17/139 (12%)

Query: 38  DECTRCGKCVTACETHII-----EKGDGGFPTVNFSIDECTFCYQCAQSCPE------PL 86
           ++C  C  C  +C +  I     E+     P   F    C  C  C +SCP        L
Sbjct: 47  EKCISCSACKESCPSDAISMEFNEEFKKEMPV--FDAGSCINCGNCVESCPTNVLEMGTL 104

Query: 87  FVAQSEAPWQAKVHITHHCLAQQQVECRSCQDACPEEAIHFALQIGRTASPQVNSEQCSG 146
                E  W     I      +  V C +C++ACP +AI        T   +++   C  
Sbjct: 105 RKEAKELLWNVPKIINLLIDEEICVSCGTCENACPVDAISH----NNTGLYEIDVNICVS 160

Query: 147 CGACVSVCPSNAMTVHYTQ 165
           C  C+ VCP     V Y +
Sbjct: 161 CKNCLKVCPVENAIVTYDE 179



 Score = 45.8 bits (107), Expect = 9e-10
 Identities = 33/124 (26%), Positives = 48/124 (38%), Gaps = 18/124 (14%)

Query: 40  CTRCGKCVTACETHIIEKGDGGFPTVNFSIDECTFCYQCAQSCPEPLF---VAQSEAPWQ 96
           C  CG CV  C         G        +  C    +C + CP       V +      
Sbjct: 221 CIGCGNCVDVCP--------GSIDLERLKVTSCIKSGKCLEVCPTTAIRIGVPEKITKRT 272

Query: 97  AKVHITHHCLAQQQVECRSCQDACP-EEAIHFALQIGRTASPQVNSEQCSGCGACVSVCP 155
           A+ +I      ++ + CR C  AC   EAI  + +   T  P +N E C  CG C + CP
Sbjct: 273 AECYIVDE---EKCIGCRICYRACNVPEAILISKE---TNLPYINPEYCVRCGLCQNACP 326

Query: 156 SNAM 159
            +A+
Sbjct: 327 VDAI 330



 Score = 41.2 bits (95), Expect = 2e-08
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 106 LAQQQVECRSCQDACPEEAIHFAL-QIGRTASPQVNSEQCSGCGACVSVCPSNAM 159
           L ++ + C +C+++CP +AI     +  +   P  ++  C  CG CV  CP+N +
Sbjct: 45  LPEKCISCSACKESCPSDAISMEFNEEFKKEMPVFDAGSCINCGNCVESCPTNVL 99



 Score = 36.2 bits (82), Expect = 7e-07
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 12/94 (12%)

Query: 40  CTRCGKCVTACETHIIEKGDGGFPTVN----FSIDE--CTFCYQCAQSCPEPLFVAQSEA 93
           C + GKC+  C T  I  G     T      + +DE  C  C  C ++C  P      EA
Sbjct: 245 CIKSGKCLEVCPTTAIRIGVPEKITKRTAECYIVDEEKCIGCRICYRACNVP------EA 298

Query: 94  PWQAKVHITHHCLAQQQVECRSCQDACPEEAIHF 127
              +K     +   +  V C  CQ+ACP +AI +
Sbjct: 299 ILISKETNLPYINPEYCVRCGLCQNACPVDAIDY 332