Pairwise Alignments

Query, 168 a.a., ferredoxin-type protein NapF from Vibrio cholerae E7946 ATCC 55056

Subject, 481 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score = 59.3 bits (142), Expect = 9e-14
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 18/122 (14%)

Query: 40  CTRCGKCVTACETHIIEKGDGGFPTVNFSIDECTFCYQCAQSCPEPLFVAQSEAPWQAKV 99
           C  CG CV  C ++ +   +G    + +    CT C  C + CP+ + + +         
Sbjct: 266 CINCGLCVDKCPSNALRFENG---KILYDPKTCTLCNTCVKECPQGVRINKGG------- 315

Query: 100 HITHHCLAQQQVECRSCQDACPEEAIHFALQIGRTASPQVNSEQCSGCGACVSVCPSNAM 159
            +   C     V C  C   CPE+AI       R+    ++ ++C  CG C  VCP++A+
Sbjct: 316 FVDGGC-----VLCEVCIKECPEDAISIK---ERSKFTSIDKKECIACGTCSMVCPNDAI 367

Query: 160 TV 161
           TV
Sbjct: 368 TV 369



 Score = 56.6 bits (135), Expect = 6e-13
 Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 25/126 (19%)

Query: 37  TDECTRCGKCVTACETHIIEKGDGGFPTVNFSIDECTFCYQCAQSCPEPLFVAQSEAPWQ 96
           +++C  CGKC+  C    I + +         +D CT C  C + CP    +   E    
Sbjct: 178 SEKCVECGKCIYVCPKDTIIEAE--------IVDGCTRCNICNEVCPVDA-IKYGE---- 224

Query: 97  AKVHITHHCLAQQQVECRSCQDACPEEAIHFA-LQIGRTASP-QVNSEQ-CSGCGACVSV 153
               +T +C+      C +C   CP++A+  +  ++ +T    + N E+ C  CG CV  
Sbjct: 225 ----VTENCIL-----CGNCISKCPKDALEISEFKVVKTKEDVKANPEKHCINCGLCVDK 275

Query: 154 CPSNAM 159
           CPSNA+
Sbjct: 276 CPSNAL 281



 Score = 55.1 bits (131), Expect = 2e-12
 Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 23/137 (16%)

Query: 39  ECTRCGKCVTACETHIIE--------KGDGGFPTVNFSIDECTFCYQCAQSCPEPLFVAQ 90
           EC  CG C   C    I          G+     V F+ D C  C +CA  CP    V +
Sbjct: 351 ECIACGTCSMVCPNDAITVKIDSLNFSGNKVHSEVIFN-DNCVLCEKCAIHCPRD--VIE 407

Query: 91  SEAPWQAKVHITHHCLAQQQ---VECRSCQDACPEEAIHFALQIGRTASPQVNSEQCSGC 147
           + + ++  V   +  +       V+C  C   CP +AI            ++ +E+C  C
Sbjct: 408 NTSGYKKVVDPENSYIRVDDGYCVKCGLCTIICPNDAID---------KGEITTERCEYC 458

Query: 148 GACVSVCPSNAMTVHYT 164
            ACV++CP+ A+ ++ T
Sbjct: 459 SACVNICPTRAIRIYRT 475



 Score = 43.9 bits (102), Expect = 4e-09
 Identities = 32/126 (25%), Positives = 44/126 (34%), Gaps = 23/126 (18%)

Query: 38  DECTRC-----GKCVTACETHIIEKGDGGFPTVNFSIDECTFCYQCAQSCPEPLFVAQSE 92
           +EC  C      KC+  C T+ I+  DG           C  C  CA+ CP         
Sbjct: 13  EECENCKSKEISKCMEVCPTNAIKMIDG-------KAFSCITCGTCAKECPTGAIKKNEY 65

Query: 93  APWQAKVHITHHCLAQQQVECRSCQDACPEEAIHFALQIGRTASPQVNSEQCSGCGACVS 152
             +     +           C  C++ACP + I         A P   +  C  CG C +
Sbjct: 66  GGYYVNRKLC--------TGCGICKNACPIDIIDIREDSTGKAYP---TGMCVMCGLCTT 114

Query: 153 VCPSNA 158
            CP NA
Sbjct: 115 ECPYNA 120



 Score = 41.6 bits (96), Expect = 2e-08
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 24/98 (24%)

Query: 64  TVNFSIDECTFCYQCAQSCPEPLFVAQSEAPWQAKVHITHHCLAQQQVECRSCQDACPEE 123
           +++   ++C  C +C   CP+   +         +  I   C       C  C + CP +
Sbjct: 173 SISIDSEKCVECGKCIYVCPKDTII---------EAEIVDGC-----TRCNICNEVCPVD 218

Query: 124 AIHFALQIGRTASPQVNSEQCSGCGACVSVCPSNAMTV 161
           AI +             +E C  CG C+S CP +A+ +
Sbjct: 219 AIKYGEV----------TENCILCGNCISKCPKDALEI 246



 Score = 34.3 bits (77), Expect = 3e-06
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 111 VECRSCQDACPEEAIHFALQIGRTASPQVNSEQCSGCGACVSVCPSNAMTV 161
           + C +C   CP  AI    +        VN + C+GCG C + CP + + +
Sbjct: 46  ITCGTCAKECPTGAI----KKNEYGGYYVNRKLCTGCGICKNACPIDIIDI 92



 Score = 28.1 bits (61), Expect = 2e-04
 Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 9/62 (14%)

Query: 98  KVHITHHCLAQQQVECRSCQDACPEEAIHFALQIGRTASPQVNSEQCSGCGACVSVCPSN 157
           K      C   +  E   C + CP  AI      G+  S       C  CG C   CP+ 
Sbjct: 8   KCRTYEECENCKSKEISKCMEVCPTNAIKMI--DGKAFS-------CITCGTCAKECPTG 58

Query: 158 AM 159
           A+
Sbjct: 59  AI 60