Pairwise Alignments

Query, 168 a.a., ferredoxin-type protein NapF from Vibrio cholerae E7946 ATCC 55056

Subject, 395 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score = 61.2 bits (147), Expect = 2e-14
 Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 9/130 (6%)

Query: 33  PDAFTDECTRCGKCVTACETHIIEKGDGGFPTVNFSIDECTFCYQCAQSCPEPLFVAQSE 92
           P A T +C  CG CV  C    I   D          D+C +C  C+Q+CP        +
Sbjct: 125 PIAVTKDCVACGVCVPECPVDAISIED----IAVIDTDKCIYCTVCSQTCPWNAIFVAGK 180

Query: 93  APWQAKVHITHHCLAQQQ-VECRSCQDACPEEAIHFALQIGRTASPQVNSEQCSGCGACV 151
            P + +  I    + +++ + C  C +ACP   I +  +      P      C  CG CV
Sbjct: 181 LPQKRQKTIKSFTVNEEECIGCEKCVEACPGSMIEYNGEALGVKLPGA----CPACGLCV 236

Query: 152 SVCPSNAMTV 161
             CP   +++
Sbjct: 237 ESCPVEVISL 246



 Score = 54.3 bits (129), Expect = 2e-12
 Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 26/132 (19%)

Query: 40  CTRCGKCVTACETHIIEKGDGGFPTVNFSIDECTFCYQCAQSCPEPLFVAQSEAPWQAKV 99
           C +C  C TAC T  + + DG    + F+  +C     C ++CP  +       P+    
Sbjct: 34  CIQCFSCATACPTGALVEKDG---KLVFNGSKCDLDGACQKACPVGIKKVDDRFPYSKG- 89

Query: 100 HITHHCLAQQQVECRSCQDACPEEAIHFALQIGRTASPQVN----------SEQCSGCGA 149
               HC     V C  C D CP E I      G+   P+            ++ C  CG 
Sbjct: 90  ----HC-----VLCEKCVDICPAEIISLP---GKAEKPKKEIIIPQEPIAVTKDCVACGV 137

Query: 150 CVSVCPSNAMTV 161
           CV  CP +A+++
Sbjct: 138 CVPECPVDAISI 149



 Score = 49.7 bits (117), Expect = 6e-11
 Identities = 39/138 (28%), Positives = 55/138 (39%), Gaps = 13/138 (9%)

Query: 38  DECTRCGKCVTACETHIIEKGDGGFPTVNFSIDECTFCYQCAQSCPEPLFVAQSEAPWQA 97
           +EC  C KCV AC   +IE  +G    V      C  C  C +SCP  + V   E  + +
Sbjct: 197 EECIGCEKCVEACPGSMIEY-NGEALGVKLP-GACPACGLCVESCP--VEVISLEVEYAS 252

Query: 98  KVHITHHCLAQQQVECRSCQDA---CPEEAIHFALQIGRTASPQVNSEQ------CSGCG 148
              +T   L   + +C  C      CP  AI      G     +  +E+      C  CG
Sbjct: 253 AKPVTDEGLVWSEEKCAYCGPCAIKCPTGAIKVVNPKGLELPSKKKTEKANEFAMCIRCG 312

Query: 149 ACVSVCPSNAMTVHYTQH 166
           AC   CP+ A+ +    H
Sbjct: 313 ACAMKCPTGALKMGKMVH 330



 Score = 48.9 bits (115), Expect = 1e-10
 Identities = 39/155 (25%), Positives = 55/155 (35%), Gaps = 40/155 (25%)

Query: 39  ECTRCGKCVTACETHIIEKGDGGFPTVNFSIDECTFCYQCAQSCPEPLFVAQSEAPWQAK 98
           +C   G C  AC   I +K D  FP   +S   C  C +C   CP  +     +A    K
Sbjct: 62  KCDLDGACQKACPVGI-KKVDDRFP---YSKGHCVLCEKCVDICPAEIISLPGKAEKPKK 117

Query: 99  --------VHITHHCLA-----------------------QQQVECRSCQDACPEEAIHF 127
                   + +T  C+A                        + + C  C   CP  AI  
Sbjct: 118 EIIIPQEPIAVTKDCVACGVCVPECPVDAISIEDIAVIDTDKCIYCTVCSQTCPWNAIFV 177

Query: 128 ALQIGRTA-----SPQVNSEQCSGCGACVSVCPSN 157
           A ++ +       S  VN E+C GC  CV  CP +
Sbjct: 178 AGKLPQKRQKTIKSFTVNEEECIGCEKCVEACPGS 212



 Score = 47.0 bits (110), Expect = 4e-10
 Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 16/134 (11%)

Query: 40  CTRCGKCVTACETHIIE---KGDGGFPTVN----FSIDECTFCYQCAQSCPEPLFVAQS- 91
           C  CG CV +C   +I    +     P  +    +S ++C +C  CA  CP       + 
Sbjct: 229 CPACGLCVESCPVEVISLEVEYASAKPVTDEGLVWSEEKCAYCGPCAIKCPTGAIKVVNP 288

Query: 92  ---EAPWQAKVHITHHCLAQQQVECRSCQDACPEEAIHFALQIGRT---ASPQVNSEQCS 145
              E P + K    +       + C +C   CP  A+     +      A  + +   C+
Sbjct: 289 KGLELPSKKKTEKANEFA--MCIRCGACAMKCPTGALKMGKMVHEGKEYARVEFSPALCN 346

Query: 146 GCGACVSVCPSNAM 159
            CG CV VCP   +
Sbjct: 347 ECGECVDVCPQKTL 360



 Score = 38.1 bits (87), Expect = 2e-07
 Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 20/91 (21%)

Query: 65  VNFSIDECTFCYQCAQSCPEPLFVAQSEAPWQAKVHITHHCLAQQQVECRSCQDACPEEA 124
           ++   D C  C  CA++CP     A   AP++        C     ++C SC  ACP  A
Sbjct: 4   ISIQEDACLVCNACAKACPTE---AIEIAPFKT-------C-----IQCFSCATACPTGA 48

Query: 125 IHFALQIGRTASPQVNSEQCSGCGACVSVCP 155
           +     + +      N  +C   GAC   CP
Sbjct: 49  L-----VEKDGKLVFNGSKCDLDGACQKACP 74



 Score = 33.5 bits (75), Expect = 4e-06
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%)

Query: 40  CTRCGKCVTACETHIIE-KGDGGFPTVNFSIDECTFCYQCAQSC 82
           C  CG+CV  C    +E  GD   P   +    C  C +C ++C
Sbjct: 345 CNECGECVDVCPQKTLELTGDDKMPLKGY----CVMCLKCIEAC 384



 Score = 32.3 bits (72), Expect = 1e-05
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 11/47 (23%)

Query: 113 CRSCQDACPEEAIHFALQIGRTASPQVNSEQCSGCGACVSVCPSNAM 159
           C +C  ACP EAI  A             + C  C +C + CP+ A+
Sbjct: 14  CNACAKACPTEAIEIA-----------PFKTCIQCFSCATACPTGAL 49



 Score = 25.8 bits (55), Expect = 0.001
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 135 ASPQVNSEQCSGCGACVSVCPSNAMTV 161
           A   +  + C  C AC   CP+ A+ +
Sbjct: 2   AGISIQEDACLVCNACAKACPTEAIEI 28