Pairwise Alignments

Query, 168 a.a., ferredoxin-type protein NapF from Vibrio cholerae E7946 ATCC 55056

Subject, 658 a.a., CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein from Methanococcus maripaludis JJ

 Score = 42.4 bits (98), Expect = 2e-08
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 113 CRSCQDACPEEAIHFALQIGRTASPQVNSEQCSGCGACVSVCPSNAMTVHY 163
           C+ C   CP  AI +  + G   +   +   C GCGAC + CPS AM + Y
Sbjct: 587 CKVCALMCPYNAITYEEKDGHLVAI-TDDVACKGCGACAAACPSGAMQLRY 636



 Score = 32.7 bits (73), Expect = 1e-05
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 139 VNSEQCSGCGACVSVCPSNAMT 160
           VN E C GC  C  +CP NA+T
Sbjct: 579 VNEEVCGGCKVCALMCPYNAIT 600



 Score = 30.4 bits (67), Expect = 6e-05
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 139 VNSEQCSGCGACVSVCP 155
           V+ + C+GCGAC + CP
Sbjct: 241 VDEDTCTGCGACAAACP 257



 Score = 30.4 bits (67), Expect = 6e-05
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 15/66 (22%)

Query: 113 CRSCQDACPEEAIH-FALQIGRTAS-----PQ-------VNSEQCSGCGACVSVCPSNAM 159
           C +C  ACP E  + F L +G   +     PQ       ++ E C  CG C  VC + A 
Sbjct: 249 CGACAAACPIEVPNEFDLGLGTRKAIYVPFPQAVPLLYTIDKEHCIDCGLCAKVCCAEA- 307

Query: 160 TVHYTQ 165
            V Y Q
Sbjct: 308 -VRYDQ 312



 Score = 30.0 bits (66), Expect = 8e-05
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 15/60 (25%)

Query: 38  DECTRCGKCVTACETHIIEKGDGGFPT-------------VNFSIDE--CTFCYQCAQSC 82
           D CT CG C  AC   +  + D G  T             + ++ID+  C  C  CA+ C
Sbjct: 244 DTCTGCGACAAACPIEVPNEFDLGLGTRKAIYVPFPQAVPLLYTIDKEHCIDCGLCAKVC 303



 Score = 26.9 bits (58), Expect = 7e-04
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 9/67 (13%)

Query: 70  DECTFCYQCAQSCP------EPLFVAQSEA---PWQAKVHITHHCLAQQQVECRSCQDAC 120
           D CT C  CA +CP        L +   +A   P+   V + +    +  ++C  C   C
Sbjct: 244 DTCTGCGACAAACPIEVPNEFDLGLGTRKAIYVPFPQAVPLLYTIDKEHCIDCGLCAKVC 303

Query: 121 PEEAIHF 127
             EA+ +
Sbjct: 304 CAEAVRY 310