Pairwise Alignments

Query, 168 a.a., ferredoxin-type protein NapF from Vibrio cholerae E7946 ATCC 55056

Subject, 205 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score = 55.8 bits (133), Expect = 4e-13
 Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 22/122 (18%)

Query: 40  CTRCGKCVTACETHIIEKGDGGFPTVNFSID--ECTFCYQCAQSCPEPLFVAQSEAPWQA 97
           C  CG C+  C    IEK         FS+D  +C  C  C+  C  P  + ++E P   
Sbjct: 71  CEHCGACLNVCPVDAIEKN-------RFSVDSEKCIKCGVCSIFCTIP--ILKNEIPVLN 121

Query: 98  KVHITHHCLAQQQVECRSCQDACPEEAIHFALQIGRTASPQVNSEQCSGCGACVSVCPSN 157
              +T+ C       C+ C   CP++AI F           +NS +C+ C  CV  CP N
Sbjct: 122 VPEVTNEC-----NNCKLCIQKCPQKAISF-----EDGKISINS-KCNLCLKCVEFCPLN 170

Query: 158 AM 159
           A+
Sbjct: 171 AL 172



 Score = 46.2 bits (108), Expect = 3e-10
 Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 15/121 (12%)

Query: 37  TDECTRCGKCVTACETHIIEKGDGGFPTVNFS--IDECTFCYQCAQSCPEPLFVAQSEAP 94
           +++C +CG C   C   I++      P +N     +EC  C  C Q CP+     +    
Sbjct: 95  SEKCIKCGVCSIFCTIPILKNE---IPVLNVPEVTNECNNCKLCIQKCPQKAISFED--- 148

Query: 95  WQAKVHITHHCLAQQQVECRSCQDACPEEAIHFALQIGRTASPQVNSEQCSGCGACVSVC 154
              K+ I   C       C  C + CP  A+       ++   +V+   C  C  C  +C
Sbjct: 149 --GKISINSKCNL-----CLKCVEFCPLNALKSPKDSLKSKIIKVDLNSCIFCKDCEEIC 201

Query: 155 P 155
           P
Sbjct: 202 P 202



 Score = 37.7 bits (86), Expect = 1e-07
 Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 2/31 (6%)

Query: 131 IGRTASPQVNSEQCSGCGACVSVCPSNAMTV 161
           IG T +P++  E C  CG CV VCP+NA++V
Sbjct: 35  IGETTNPEL--EDCICCGLCVDVCPTNAISV 63



 Score = 34.7 bits (78), Expect = 1e-06
 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 20/91 (21%)

Query: 64  TVNFSIDECTFCYQCAQSCPEPLFVAQSEAPWQAKVHITHHCLAQQQVECRSCQDACPEE 123
           T N  +++C  C  C   CP       + + ++ +  I  HC A        C + CP +
Sbjct: 38  TTNPELEDCICCGLCVDVCP-----TNAISVFKFRDIICEHCGA--------CLNVCPVD 84

Query: 124 AIHFALQIGRTASPQVNSEQCSGCGACVSVC 154
           AI             V+SE+C  CG C   C
Sbjct: 85  AI-------EKNRFSVDSEKCIKCGVCSIFC 108



 Score = 32.3 bits (72), Expect = 5e-06
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 9/47 (19%)

Query: 113 CRSCQDACPEEAIHFALQIGRTASPQVNSEQCSGCGACVSVCPSNAM 159
           C  C D CP  AI            +     C  CGAC++VCP +A+
Sbjct: 49  CGLCVDVCPTNAISVF---------KFRDIICEHCGACLNVCPVDAI 86