Pairwise Alignments
Query, 168 a.a., ferredoxin-type protein NapF from Vibrio cholerae E7946 ATCC 55056
Subject, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ
Score = 66.2 bits (160), Expect = 6e-16
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 14/143 (9%)
Query: 19 QPNQSQVRLPWLARPDAFTDECTRCGKCVTACETHIIE-KGDGGFPTVNFSIDECTFCYQ 77
+P + + LP P A T++C CG C++ C + +G+ N C +C
Sbjct: 116 EPAKRNITLP--KEPIAVTEDCVGCGVCISECPVGALSIEGEKAVVDKN----SCIYCSI 169
Query: 78 CAQSCP-EPLFVAQSEAPWQAKVHITHHCLAQQQVECRSCQDACPEEAIHFALQIGRTAS 136
CAQ+CP +FVA ++P + K + + + C C D CP + I +
Sbjct: 170 CAQTCPWNAIFVAGKKSPKRDKNIVKFSVDSDLCIGCGDCTDKCPRDLIVLNEMVA---- 225
Query: 137 PQVNSEQCSGCGACVSVCPSNAM 159
V + C CG C++ CP +A+
Sbjct: 226 --VPPKGCPACGLCMAACPVDAI 246
Score = 56.6 bits (135), Expect = 5e-13
Identities = 34/134 (25%), Positives = 51/134 (38%), Gaps = 25/134 (18%)
Query: 40 CTRCGKCVTACETHI-----IEKGDGGFPTVNFSIDECTFCYQCAQSCPEPLFVAQSEAP 94
C CG CV AC IE + + +C C +C + CP L + +
Sbjct: 32 CQLCGNCVNACPNDALNLREIELNGKTIKQIEYFPTKCDLCGECVKVCPNNLKIENDK-- 89
Query: 95 WQAKVHITHHCLAQQQVECRSCQDACPEEAIHFA-------LQIGRTASPQVNSEQCSGC 147
+ C V C C +ACP++ + I P +E C GC
Sbjct: 90 ------LKGFC-----VGCMKCVEACPDDYVGMEGVVEPAKRNITLPKEPIAVTEDCVGC 138
Query: 148 GACVSVCPSNAMTV 161
G C+S CP A+++
Sbjct: 139 GVCISECPVGALSI 152
Score = 50.1 bits (118), Expect = 5e-11
Identities = 42/154 (27%), Positives = 62/154 (40%), Gaps = 23/154 (14%)
Query: 16 PNRQPNQSQVRL--PWLARPDAFTDECTRCGKCVTACETHIIEKGD--GGFPTVNFSIDE 71
PN N ++ L + + + F +C CG+CV C ++ + D GF
Sbjct: 43 PNDALNLREIELNGKTIKQIEYFPTKCDLCGECVKVCPNNLKIENDKLKGF--------- 93
Query: 72 CTFCYQCAQSCPEPLFVAQSEAPWQAKVHIT----HHCLAQQQVECRSCQDACPEEAIHF 127
C C +C ++CP+ +V AK +IT + + V C C CP A+
Sbjct: 94 CVGCMKCVEACPDD-YVGMEGVVEPAKRNITLPKEPIAVTEDCVGCGVCISECPVGALSI 152
Query: 128 ALQIGRTASPQVNSEQCSGCGACVSVCPSNAMTV 161
G A NS C C C CP NA+ V
Sbjct: 153 E---GEKAVVDKNS--CIYCSICAQTCPWNAIFV 181
Score = 48.1 bits (113), Expect = 2e-10
Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 40 CTRCGKCVTACETHIIEKG-DGGFPT------VNFSIDECTFCYQCAQSCPEPLFVAQS- 91
C CG C+ AC IE + G P + + ++C +C CA CP +
Sbjct: 231 CPACGLCMAACPVDAIELVVEYGSPKPITDEGIVWDEEKCAYCGPCAIKCPNNAINVVNP 290
Query: 92 ---EAPWQAKVHITHHCLAQQQVECRSCQDACPEEAIHFALQIGRTASPQVNSEQ----- 143
E P + K + + + C +C +CP +A L+IG+ E+
Sbjct: 291 KGLEMPSRKKTEKANEF--KMCIRCGACVQSCPNDA----LRIGKIIHDGKEYERIEFSP 344
Query: 144 --CSGCGACVSVCPSNAMTV 161
C CG C+ CP + + +
Sbjct: 345 NLCDSCGKCIETCPYDMLNL 364
Score = 43.5 bits (101), Expect = 4e-09
Identities = 33/134 (24%), Positives = 50/134 (37%), Gaps = 15/134 (11%)
Query: 37 TDECTRCGKCVTACETHIIEKGDGGFPTVNFSIDECTFCYQCAQSCPEPLFVAQSEAPWQ 96
+D C CG C C +I + V C C C +CP E +
Sbjct: 200 SDLCIGCGDCTDKCPRDLIVLNE----MVAVPPKGCPACGLCMAACPVDAIELVVE--YG 253
Query: 97 AKVHITHHCLAQQQVECRSCQDA---CPEEAIHFALQIGRTASPQVNSEQ------CSGC 147
+ IT + + +C C CP AI+ G + +E+ C C
Sbjct: 254 SPKPITDEGIVWDEEKCAYCGPCAIKCPNNAINVVNPKGLEMPSRKKTEKANEFKMCIRC 313
Query: 148 GACVSVCPSNAMTV 161
GACV CP++A+ +
Sbjct: 314 GACVQSCPNDALRI 327
Score = 42.4 bits (98), Expect = 1e-08
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 65 VNFSIDECTFCYQCAQSCPEPLFVAQSEAPWQAKVHITHHCLAQQQVECRSCQDACPEEA 124
+ + ++C C C SCP +EA K++ C C +C +ACP +A
Sbjct: 2 IKINTEDCYMCKACENSCP-------TEA---LKLNPFKVCQL-----CGNCVNACPNDA 46
Query: 125 IHF-ALQIGRTASPQVN--SEQCSGCGACVSVCPSN 157
++ +++ Q+ +C CG CV VCP+N
Sbjct: 47 LNLREIELNGKTIKQIEYFPTKCDLCGECVKVCPNN 82
Score = 35.0 bits (79), Expect = 2e-06
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 11/49 (22%)
Query: 113 CRSCQDACPEEAIHFALQIGRTASPQVNSEQCSGCGACVSVCPSNAMTV 161
C++C+++CP EA+ +P + C CG CV+ CP++A+ +
Sbjct: 12 CKACENSCPTEALKL--------NP---FKVCQLCGNCVNACPNDALNL 49
Score = 28.1 bits (61), Expect = 2e-04
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 138 QVNSEQCSGCGACVSVCPSNAMTVH 162
++N+E C C AC + CP+ A+ ++
Sbjct: 3 KINTEDCYMCKACENSCPTEALKLN 27