Pairwise Alignments

Query, 583 a.a., nitrate/nitrite two-component system sensor histidine kinase NarQ from Vibrio cholerae E7946 ATCC 55056

Subject, 679 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score = 73.6 bits (179), Expect = 3e-17
 Identities = 74/297 (24%), Positives = 135/297 (45%), Gaps = 21/297 (7%)

Query: 280 ILRHWVALEGICALRLEIEEEAGKP----LILQEGKPSGAVMLQTPLTLDGH-HLGFLYW 334
           +  H  A E      L+    AG+P    L+ ++G+P  A + +T L  DG   +  L  
Sbjct: 387 VAEHQRARETARLAALQRGAAAGQPQRLLLVCRDGQPFEAEVSETLLPADGDAEVQLLIR 446

Query: 335 EAGSPEPDRALIDNFALILSRAIYYNQAQRQAEQLLLMEERATIARELHDSLAQSLSYLK 394
           +    E  R  +++      R  + +Q   + +++    ER  +AR+LHD + Q L+ LK
Sbjct: 447 DVSQAEQLRRDLEDAN---QRLQHLSQRLIEVQEI----ERREVARDLHDDVGQHLTGLK 499

Query: 395 IQLTLLKRSVTPLKSDGDLSKTENIIREIDKGLSDAYTQLREL-LTTFRLTLTEGSFGQS 453
           + L  L R     +  GD S+ E + + +   +  A  ++R L L+   L L       +
Sbjct: 500 LHLQRLIR-----RQAGD-SEFERLSQPLVASMDAALAKVRSLSLSLHPLQLETLGLEAA 553

Query: 454 LLGMLTQLSGQTDAKIELNNALSSIALDAHQQVHLVQLIREATINAIKHAKATKIKVNCQ 513
           +   L      +    EL    S+  +   + V   +L++EA  N  +HA+A  +++   
Sbjct: 554 VRWHLQHFLEASGTCWELEVRGSTTEIPPGRAVAAFRLVQEAVNNVARHARARTVRILMV 613

Query: 514 EQQGRVQVTIEDDGVGFDLQD--HKINHYGMSIMQERAARLRGELKVESAPGKGCKV 568
             +  +++ I DDG GFD+ +        G++ M ER A   G+L++ S PG G ++
Sbjct: 614 CDEHELRLEILDDGRGFDVPEALQGAQSLGLTSMHERVASFGGDLRISSLPGMGTRI 670