Pairwise Alignments

Query, 583 a.a., nitrate/nitrite two-component system sensor histidine kinase NarQ from Vibrio cholerae E7946 ATCC 55056

Subject, 567 a.a., nitrate/nitrite sensor protein NarQ (RefSeq) from Shewanella loihica PV-4

 Score =  353 bits (905), Expect = e-101
 Identities = 217/564 (38%), Positives = 317/564 (56%), Gaps = 7/564 (1%)

Query: 17  SLTRTMAKAMLLILFLSALTTGVAIVTLASSLNDAEAVNVSGSMRMQSYRLAYDIQTQSH 76
           SLT T+ + ML ++ LS+     AI  LA SL DA A+N SGS+RMQSYRL +   + S 
Sbjct: 5   SLTSTILRLMLALILLSSGLATFAIANLAYSLGDARAINASGSLRMQSYRLMFYANSGSE 64

Query: 77  DYKAHIFLFENSLYSPSMLALLDWTVPSDIQQDYYQLIERWHELKKVLNSDQKAQYLDQV 136
                I  FE +L+S ++   LDW  P D+   Y  +I++W  +K+ +  +    Y+  +
Sbjct: 65  GADDKIREFEATLHSDALKRSLDWMTPDDLASQYLLVIQKWQVMKQYIEEENSRLYVSAL 124

Query: 137 APFVSLVDGFVLKLQRFSERKLIALAAVGSFGLGGIFAVSLFVVYYIREQVVRPLNAMVD 196
             FV  +D FVL+ + F+  KL  LAA    GLG +  ++ F V + + +VV PLN +++
Sbjct: 125 KDFVDTIDLFVLETEEFAAFKLKLLAASQITGLGLMLLIAFFAVRFTKRKVVTPLNQLME 184

Query: 197 ASEKIKNRNFDVMLEETSSTEMGILSRTFNSMAGDLGKLYRGLEHAVNEKTNKLQMANQS 256
           ++  I    FDV + ++   E+  LS    + A +L  LY  LE+ V EKT  L  AN  
Sbjct: 185 SANTISKGEFDVTMPDSEYIELSSLSNALATSAKELSTLYNNLENQVKEKTFALTRANNE 244

Query: 257 LQVLYHSSQELTASRITASNFQTILRHWVALEGICALRLEIEEEAGKPLILQ-EGKPSGA 315
           L++LY +   L + ++  S  +  L    A E    LRL I ++  + L +  +G    A
Sbjct: 245 LKLLYDNLVMLHSGKLEISTLKQALNQLRAHEPNSFLRLVIAQDDKEKLYIDADGGWPIA 304

Query: 316 VMLQT--PLTLDGHHLGFLYWEAGSPEPDRALIDNFALILSRAIYYNQAQRQAEQLLLME 373
              QT  PL    + LG+L   A   E +  L +NFA++L+R+I    A  Q +QL LME
Sbjct: 305 SRSQTRFPLKFADNELGYLEVTA-LGEINHPLFENFAIMLARSIVIYNAGEQRQQLALME 363

Query: 374 ERATIARELHDSLAQSLSYLKIQLTLLKRSVTPLKSDGDLSKTENIIREIDKGLSDAYTQ 433
           ER  IARELHDSL Q LS+LKIQ+ LL +    L S     + E  ++EI++G++ AY Q
Sbjct: 364 ERGVIARELHDSLGQLLSFLKIQVNLLSKG---LDSQCRSPQVEEQLKEINEGVNTAYVQ 420

Query: 434 LRELLTTFRLTLTEGSFGQSLLGMLTQLSGQTDAKIELNNALSSIALDAHQQVHLVQLIR 493
           LRELL+TFRLT+ + +   ++  ML QL GQT AKI L + L    L AHQ +H++QL R
Sbjct: 421 LRELLSTFRLTIKDPNLNHAIEMMLDQLRGQTTAKITLEDKLPIQLLGAHQHIHVLQLTR 480

Query: 494 EATINAIKHAKATKIKVNCQEQQGRVQVTIEDDGVGFDLQDHKINHYGMSIMQERAARLR 553
           EAT+NAIKHA+A  I + C      V+++I DDGVG +    +  H+G+ IM ERA+RL 
Sbjct: 481 EATLNAIKHAQADHIHICCTRSGNNVKISISDDGVGLEKLKERDQHFGIGIMHERASRLS 540

Query: 554 GELKVESAPGKGCKVVLTYQQSEE 577
           G +   S    G  V L +   +E
Sbjct: 541 GVVDFSSNEQGGTTVTLLFPPEQE 564