Pairwise Alignments

Query, 583 a.a., nitrate/nitrite two-component system sensor histidine kinase NarQ from Vibrio cholerae E7946 ATCC 55056

Subject, 585 a.a., nitrate/nitrite sensor protein NarQ (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  321 bits (823), Expect = 5e-92
 Identities = 202/562 (35%), Positives = 309/562 (54%), Gaps = 8/562 (1%)

Query: 26  MLLILFLSALTTGVAIVTLASSLNDAEAVNVSGSMRMQSYRLAYDIQTQSHDYKAHIFLF 85
           ML+++ LS+     AI+ L+ SL DA+A+N SGS+RMQSYRL +   + S   +  I  F
Sbjct: 1   MLVLILLSSSLAIFAIINLSYSLGDAKAINASGSLRMQSYRLMFYANSGSEAAQEKITEF 60

Query: 86  ENSLYSPSMLALLDWTVPSDIQQDYYQLIERWHELKKVLNSDQKAQYLDQVAPFVSLVDG 145
           EN+L+S ++     W  P  I   Y  +I++W  +K  +  +    Y   +  FV  +D 
Sbjct: 61  ENTLHSEALHPSKSWLSPKKIAAQYQLVIDKWLVMKYYIEQENSRDYAASLKDFVDTIDL 120

Query: 146 FVLKLQRFSERKLIALAAVGSFGLGGIFAVSLFVVYYIREQVVRPLNAMVDASEKIKNRN 205
            VL+++  +  KL  LAA   FGLG + +++   V + + +VV PL  +++++  I   N
Sbjct: 121 LVLEMEHHAAFKLRLLAASQIFGLGLMLSIAFLAVRFTKRKVVVPLQQLMESANTISKGN 180

Query: 206 FDVMLEETSSTEMGILSRTFNSMAGDLGKLYRGLEHAVNEKTNKLQMANQSLQVLYHSSQ 265
           F++ + ET   E+  L+      A +L  LY  LE  V EKT  L  AN  L  LY +  
Sbjct: 181 FEIEMPETEYIELTALTDALQKTARELATLYGNLESQVAEKTLALTRANNELAFLYDTLL 240

Query: 266 ELTASRITASNFQTILRHWVALEGICALRLEIE--EEAGKPLILQEGKPSGA-VMLQTPL 322
            L A ++     +  L      E I  LRL I+  E+  + +    G P  A    + PL
Sbjct: 241 TLNAKKLDYKALKAALNQLKDYESIDYLRLIIQYPEQELEMIEANGGWPESADNSTRFPL 300

Query: 323 TLDGHHLGFLYWEAGSPEPDRALIDNFALILSRAIYYNQAQRQAEQLLLMEERATIAREL 382
             +  +LG+L     + + +  L  NFA++L+R+I  + A  Q +QL LMEER  IAREL
Sbjct: 301 QFEQANLGYLEL-ISAQDINTPLFKNFAIMLTRSIVIHNATEQRQQLALMEERGVIAREL 359

Query: 383 HDSLAQSLSYLKIQLTLLKRSVTPLKSDGDLSKTENIIREIDKGLSDAYTQLRELLTTFR 442
           HDSL Q LS+LKIQ++LL+++   L         E  + EI++G+S AY QLRELL+TFR
Sbjct: 360 HDSLGQVLSFLKIQISLLRKN---LDHSCRSPAVEVQLTEINEGVSTAYVQLRELLSTFR 416

Query: 443 LTLTEGSFGQSLLGMLTQLSGQTDAKIELNNALSSIALDAHQQVHLVQLIREATINAIKH 502
           LT+ E +   ++  ML QL   TD KI L+  LS   L+A Q +H++Q+ REAT+NAIKH
Sbjct: 417 LTIKEPNLKNAMEAMLEQLRANTDIKIHLDYKLSPQWLEAKQHIHILQITREATLNAIKH 476

Query: 503 AKATKIKVNC-QEQQGRVQVTIEDDGVGFDLQDHKINHYGMSIMQERAARLRGELKVESA 561
           A A+ I + C ++ +G V +++ D+GVG      +  H+G+ IM ERA++L GE+   S 
Sbjct: 477 ANASHINIRCYKDDRGMVNISVSDNGVGIGHIKERDQHFGIGIMHERASKLDGEVVFSSN 536

Query: 562 PGKGCKVVLTYQQSEEKNKNEL 583
                    T Q+ +E   + L
Sbjct: 537 DTHTNSTATTEQRHQENPDSPL 558