Pairwise Alignments

Query, 208 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 209 a.a., DNA-binding nitrate/nitrite response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  196 bits (498), Expect = 3e-55
 Identities = 100/201 (49%), Positives = 142/201 (70%), Gaps = 3/201 (1%)

Query: 5   VLLVDDHPLMRRGINQLLSFEEEFEVVAEAGSGAEAIALAHDLQPDLILLDLNMKGMSGL 64
           VL+VDDHPL+R+GI QL++ + +F +  E GSG +A++     +PD++LLDLNMKGM+GL
Sbjct: 7   VLVVDDHPLLRKGICQLITSDPDFSLFGEVGSGLDALSSVATDEPDIVLLDLNMKGMTGL 66

Query: 65  DTLTALRTDECDAYVVILTVSDSAADIEALVKAGADGYLLKDTEPDQLVALLKQAMQGEK 124
           DTL A+R +   + +VILTVSD+  D+  L++AGADGYLLKDTEPD L+  LK  M G +
Sbjct: 67  DTLNAMRQEGVTSRIVILTVSDAKQDVIRLLRAGADGYLLKDTEPDLLLDKLKNTMSGHR 126

Query: 125 AFSESVERYLLNREHTSNPFE---ALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVH 181
             SE V  YL   ++ ++  E   +LT RE+QI+ ++A+G  NR I++ L ISE TVKVH
Sbjct: 127 VISEEVAEYLYELKNAADEQEWVSSLTPRELQILQQLAEGLSNRMISEHLHISEGTVKVH 186

Query: 182 MKSLLKKLDVPSRTAATILYL 202
           +K+LL+K +  SRT   + YL
Sbjct: 187 VKNLLRKANAKSRTEMAVRYL 207