Pairwise Alignments

Query, 208 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 214 a.a., DNA-binding response regulator, LuxR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  112 bits (279), Expect = 7e-30
 Identities = 64/199 (32%), Positives = 106/199 (53%), Gaps = 3/199 (1%)

Query: 5   VLLVDDHPLMRRGINQLLSFEEEFEVVAEAGSGAEAIALAHDLQPDLILLDLNMKGMSGL 64
           + LVDDH L+R GI ++L  E   +VV EA  G  A+  A   + D+IL+D+NM  M GL
Sbjct: 4   IYLVDDHELVRTGIRRILEDERGIKVVGEAPDGETAVQWARQNEADVILMDMNMPVMGGL 63

Query: 65  DTLTALRTDECDAYVVILTVSDSAADIEALVKAGADGYLLKDTEPDQLVALLKQAMQGEK 124
           +    +   +  A +++LTV         +++AGA GYL K   P +++  ++Q  +G++
Sbjct: 64  EATRKILRYQPHAKIIVLTVHTEDPFPSKVMQAGASGYLTKGATPPEVLQAIRQVSRGQR 123

Query: 125 AFSESVERYLLNREHT---SNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVH 181
             S  + + +   +      NPF+AL+ERE+QIM  +  G +   I+++L +S  TV  +
Sbjct: 124 YLSPEIAQQMALSQFNPADENPFKALSERELQIMLMITNGEKVNDISEQLNLSPKTVNSY 183

Query: 182 MKSLLKKLDVPSRTAATIL 200
              L  KL +      T L
Sbjct: 184 RYRLFAKLGISGDVELTRL 202